2021
DOI: 10.1093/ajcn/nqab064
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A combination of single nucleotide polymorphisms is associated with the interindividual variability in the blood lipid response to dietary fatty acid consumption in a randomized clinical trial

Abstract: Background Blood lipid concentrations display high interindividual variability in response to dietary interventions, partly due to genetic factors. Existing studies have focused on single nucleotide polymorphisms (SNPs) analyzed individually, which only explain a limited fraction of the variability of these complex phenotypes. Objective We aimed to identify combinations of SNPs associated with the variability in LDL cholester… Show more

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Cited by 3 publications
(1 citation statement)
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“…A 2‐step approach was followed, combining dimension reduction by univariate filtering followed by PLS regression, as has been previously applied with SNPs. [ 22 , 29 , 30 ] The step of univariate filtering consisted of selecting SNPs that showed a p ‐value < 0.05 (Wald test asymptotic p ‐value) following analysis with PLINK (v1.07, http://pngu.mgh.harvard.edu/purcell/plink/ ), which is an open‐source online toolset designed to perform tests that determine level of association between genotypic and phenotypic data. A PLS regression model including all thus selected variables coded in units of variance was then built.…”
Section: Methodsmentioning
confidence: 99%
“…A 2‐step approach was followed, combining dimension reduction by univariate filtering followed by PLS regression, as has been previously applied with SNPs. [ 22 , 29 , 30 ] The step of univariate filtering consisted of selecting SNPs that showed a p ‐value < 0.05 (Wald test asymptotic p ‐value) following analysis with PLINK (v1.07, http://pngu.mgh.harvard.edu/purcell/plink/ ), which is an open‐source online toolset designed to perform tests that determine level of association between genotypic and phenotypic data. A PLS regression model including all thus selected variables coded in units of variance was then built.…”
Section: Methodsmentioning
confidence: 99%