Genomic comparison of Neodiprion sertifer nucleopolyhedrovirus (NeseNPV) and Neodiprion lecontei nucleopolyhedrovirus (NeleNPV) showed that the hymenopteran baculoviruses had features in common and were distinct from other, fully sequenced lepidopteran and dipteran baculoviruses. Their genomes were small in size (86 462 and 81 755 bp, respectively), had low G+C contents (33?8 and 33?3 mol%, respectively) and contained fewer open reading frames (ORFs) (90 and 89, respectively) than other baculoviruses. They shared 69 ORFs (48?6 % mean amino acid identity overall), 43 of which were previously identified baculovirus homologues. The remaining shared ORFs could be common to other baculoviruses, but low amino acid identities precluded identifying them as such. Some may also be unique to hymenopteran baculoviruses. These included a trypsin-like protease, a zinc-finger protein, regulator of chromosome condensation proteins, a densovirus capsid-like protein and a phosphotransferase. Structural analysis, the presence of conserved domains and phylogenetic studies suggested that some of these ORFs may be functional and could have been transferred horizontally from an insect host. ORFs found only in NeseNPV and NeleNPV may play a role in host specificity and/or tissue tropism, as hymenopteran baculoviruses are restricted to the midgut. The genomes were basically collinear, but contained non-syntenic regions (NSRs) with large numbers of repeats between their polyhedrin and dbp genes. They differed from each other in the number of ORFs and the G+C content of their NSRs and the presence of homologous regions in the NeseNPV genome. NeleNPV also had a short inversion relative to NeseNPV. NeseNPV contained 21 ORFs not found in NeleNPV and NeleNPV had 20 ORFs not found in NeseNPV.
INTRODUCTIONThe majority of baculoviruses infect insects from the order Lepidoptera, but they have also been isolated from members of Diptera, Hymenoptera and a limited number of other hosts (Volkman et al., 1995). Until recently, most fully sequenced baculovirus genomes were from lepidopteran hosts and were divided into either group I or II nucleopolyhedroviruses (NPVs) or granuloviruses (GVs) (Herniou et al., 2001). Sequencing of the Culex nigripalpus NPV (CuniNPV) genome showed that the dipteran baculoviruses are at a large evolutionary distance from the lepidopteran NPVs and 3These authors contributed equally to this work. Unlike the majority of lepidopteran baculoviruses, hymenopteran baculoviruses replicate only in the epithelial cells of the larval midgut. The gregarious nature of many sawflies, combined with the excretion of infective virus from the midgut prior to insect death, leads to the rapid spread of the viruses with insects, dying 4-7 days after infection (Federici, 1997). Dipteran baculoviruses are also restricted to midgut replication, but their feeding ecologies differ from those of sawflies. Hymenopteran and lepidopteran larvae feed on terrestrial plants, whereas mosquito larvae are aquatic (Afonso et al., 2001;Herniou et al., 2004).
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