Carbon monoxide, a classical respiratory inhibitor, also exerts vasodilatory, anti-inflammatory, and antiapoptotic effects. COreleasing molecules have therapeutic value, increasing phagocytosis and reducing sepsis-induced lethality. Here we identify for the first time the bacterial targets of Ru(CO) 3 Cl(glycinate) (CORM-3), a ruthenium-based carbonyl that liberates CO rapidly under physiological conditions. Contrary to the expectation that CO would be preferentially inhibitory at low oxygen tensions or anaerobically, Escherichia coli cultures were also sensitive to CORM-3 at concentrations equimolar with oxygen. CORM-3, assayed as ruthenium, was taken up by bacteria and rapidly delivered CO intracellularly to terminal oxidases. Microarray analysis of CORM-3-treated cells revealed extensively modified gene expression, notably down-regulation of genes encoding key aerobic respiratory complexes. Genes involved in metal metabolism, homeostasis, or transport were also differentially expressed, and free intracellular zinc levels were elevated. Probabilistic modeling of transcriptomic data identified the global transcription regulators ArcA, CRP, Fis, FNR, Fur, BaeR, CpxR, and IHF as targets and potential CO sensors. Our discovery that CORM-3 is an effective inhibitor and global regulator of gene expression, especially under aerobic conditions, has important implications for administration of CO-releasing agents in sepsis and inflammation.It has been recognized for over 80 years that carbon monoxide (CO) combines with ferrous hemoglobin, competing with oxygen and inhibiting respiration (1). Recently, however, CO has been shown to have unexpected and profound physiological effects in higher organisms. Inducible heme oxygenase-1 and constitutive heme oxygenase-2 degrade heme to generate CO that has vasodilatory, antiflammatory, and antiapoptotic effects (2). The CO is thought to target transition elements in biological systems, particularly hemes (in oxidases, globins, and CO sensors, for example) (3), nickel (in CO dehydrogenase), and complex nickel-, iron-and sulfur-containing clusters (2). The impact of CO in physiology and medicine has prompted development of metal carbonyl compounds (carbon monoxide-releasing molecules; CO-RMs) 2 to deliver CO in biological environments. Such molecules are pharmacologically active, eliciting vasodilation in isolated aorta and mediating hypotension in vivo (4). Newer water-soluble CO-RMs have revealed roles for CO in suppression of inflammation, protection against hypoxia-reoxygenation and oxidative stress, and mitigation of myocardial infarction and other disorders (5).Considering the potent biological activities of CO and CORMs, we know little about CO toxicity toward microorganisms, despite CO being a stable gas that might find application in antimicrobial therapies. Indeed, recent studies in inflammatory models of disease, such as endotoxin exposure, suggest that heme oxygenase-1 and its products exert beneficial effects in mice (6 -8). Although biliverdin (9) generated by HO ac...