23Aspergillus fumigatus is a major human pathogen that causes hundreds of thousands of infections 24 yearly with high mortality rates. In contrast, Aspergillus fischeri and the recently described 25Aspergillus oerlinghausenensis, the two species most closely related to A. fumigatus, are not 26 known to be pathogenic. Some of the "cards of virulence" that A. fumigatus possesses are 27 secondary metabolites that impair the host immune system, protect from host immune cell 28 attacks, or acquire key nutrients. Secondary metabolites and the biosynthetic gene clusters 29 (BGCs) that typically encode them often vary within and between fungal species. To gain insight 30 into whether secondary metabolism-associated cards of virulence vary between A. fumigatus, A. 31 oerlinghausenensis, and A. fischeri, we conducted extensive genomic and secondary metabolite 32 profiling analyses. By analyzing multiple A. fumigatus, one A. oerlinghausenensis, and multiple 33A. fischeri strains, we identified both conserved and diverged secondary metabolism-associated 34 cards of virulence. For example, we found that all species and strains examined biosynthesized 35 the major virulence factor gliotoxin, consistent with the conservation of the gliotoxin BGC 36 across genomes. However, species differed in their biosynthesis of fumagillin and pseurotin, 37 both contributors to host tissue damage during invasive aspergillosis; these differences were 38 reflected in sequence divergence of the intertwined fumagillin/pseurotin BGCs across genomes. 39These results delineate the similarities and differences in secondary metabolism-associated cards 40 of virulence between a major fungal pathogen and its nonpathogenic closest relatives, shedding 41 light into the genetic and phenotypic changes associated with the evolution of fungal 42 pathogenicity. 43
Importance 44The major fungal pathogen Aspergillus fumigatus kills tens of thousands each year. In contrast, 45 the two closest relatives of A. fumigatus, namely Aspergillus fischeri and Aspergillus 46 oerlinghausenensis, are not considered pathogenic. A. fumigatus virulence stems, partly, from its 47 ability to produce small molecules called secondary metabolites that have potent activities during 48 infection. In this study, we examined whether A. fumigatus secondary metabolites and the 49 metabolic pathways involved in their production are conserved in A. oerlinghausenensis and A. 50 fischeri. We found that the nonpathogenic close relatives of A. fumigatus produce some, but not 51 all, secondary metabolites thought to contribute to the success of A. fumigatus in causing human 52 disease and that these similarities and differences were reflected in the underlying metabolic 53 pathways involved in their biosynthesis. Compared to its nonpathogenic close relatives, A.