Unusually Fast bis-Histidyl Coordination in a Plant Hemoglobin

Abstract

The recently identified nonsymbiotic hemoglobin gene MtGlb1-2 of the legume Medicago truncatula possesses unique properties as it generates four alternative splice forms encoding proteins with one or two heme domains. Here we investigate the ligand binding kinetics of MtGlb1-2.1 and MtGlb1-2.4, bearing one and two hemes, respectively. Unexpectedly, the overall time-course of ligand rebinding was unusually fast. Thus, we complemented nanosecond laser flash photolysis kinetics with data collected with a hybrid femtosecond–nanosecond pump–probe setup. Most photodissociated ligands are rebound geminately within a few nanoseconds, which leads to rates of the bimolecular rebinding to pentacoordinate species in the 108 M-1s-1 range. Binding of the distal histidine to the heme competes with CO rebinding with extremely high rates (kh~105 s-1). Histidine dissociation from the heme occurs with comparable rates, thus resulting in moderate equilibrium binding constants (KH~1). The rate constants for ligation and deligation of distal histidine to the heme are the highest reported for any plant or vertebrate globin. The combination of microscopic rates results in unusually high overall ligand binding rate constants, a fact that contributes to explaining at the mechanistic level the extremely high reactivity of these proteins toward the physiological ligands oxygen, nitric oxide and nitrite.

Kinetic and dynamical properties of truncated hemoglobins of the Antarctic bacterium Pseudoalteromonas haloplanktis TAC125

“…Following the approach we exploited other Hbs, both pentacoordinated, like human Hb (Sottini, Abbruzzetti, Spyrakis, et al, 2005), protoglobin (Tilleman et al, 2015), and hexa-coordinated, like human Cygb (Gabba et al, 2013), Ngb (Abbruzzetti et al, 2009;Boron, Capece, et al, 2015) plant Hbs (Abbruzzetti et al, 2021(Abbruzzetti et al, , 2007Bisht et al, 2011), and nitrophorins (Abbruzzetti, He, et al, 2012), we used a minimal kinetic model, reported in Scheme 1, to perform a global analysis of V 1 amplitudes at 1 and 0.1 atm CO. The scheme, derived from the MD simulations results, takes into account transient binding at the primary docking site, ligand exchange with the solvent, and migration to an off-pathway temporary docking site (Tr2).…”