2006
DOI: 10.1186/1477-5956-4-12
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Abstract: Background: We describe an ELISA-based method that can be used to identify and quantitate proteins in biological samples. In this method, peptides in solution, derived from proteolytic digests of the sample, compete with substrate-attached synthetic peptides for antibodies, also in solution, generated against the chosen peptides. The peptides used for the ELISA are chosen on the basis of their being (i) products of the proteolytic (e.g. tryptic) digestion of the protein to be identified and (ii) unique to the … Show more

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Cited by 12 publications
(6 citation statements)
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“…To analyze for epitope specificity, BLAST search, with parameters adjusted for short input sequence, using the epitope sequence as query was performed against all reported human and dog sequences from NCBI non-redundant protein database. The specific parameters were set to 20.000 expect threshold, the word size length was 2, PAM30 without compositional adjustment was used as substitution matrix and low complexity regions filter was switched off (parameters available at http://www.ncbi.nlm.nih.gov/blast/Why.shtml ) [42] [44] .…”
Section: Methodsmentioning
confidence: 99%
“…To analyze for epitope specificity, BLAST search, with parameters adjusted for short input sequence, using the epitope sequence as query was performed against all reported human and dog sequences from NCBI non-redundant protein database. The specific parameters were set to 20.000 expect threshold, the word size length was 2, PAM30 without compositional adjustment was used as substitution matrix and low complexity regions filter was switched off (parameters available at http://www.ncbi.nlm.nih.gov/blast/Why.shtml ) [42] [44] .…”
Section: Methodsmentioning
confidence: 99%
“…High protein concentration in the diluted samples could lead to non-specific binding of the antibodies to antigens other than CagA, VacA and NapA ; specifically, the dissolved peptides compete with the peptides bound to receptors for antibodies. Thus, a diluted concentration of antigens should be used to obtain an accurate result [ 54 , 55 ]. However, the high transcript levels of CagA, VacA and NapA did not completely correspond to the protein yields, which could be because that the quantity of mRNA levels does not restrict translation and that post-translation modification can lead to the lysis of proteins [56] .…”
Section: Discussionmentioning
confidence: 99%
“…Maxisorp Nunc C-bottom strips were coated overnight at 4 0 C with the indicated amounts of synthetic peptides (Fig. 1 ) dissolved in sodium carbonate buffer pH 9.6 [ 26 ]. After blocking, as in western blot experiments, the OT-R and V1aR antibodies were added for 2h at room temperature at the indicated dilution followed by the secondary anti-rabbit antibody conjugated with horseradish peroxidase.…”
Section: Methodsmentioning
confidence: 99%