Haploinsufficiency of NSD1, which dimethylates histone H3 lysine 36 (H3K36), causes Sotos syndrome (SoS), an overgrowth syndrome. DNMT3A and DNMT3B recognizes H3K36 trimethylation (H3K36me3) through PWWP domain to exert de novo DNA methyltransferase activity and establish imprinted differentially methylated regions (DMRs). Since decrease of H3K36me3 and genome-wide DNA hypomethylation in SoS were observed, hypomethylation of imprinted DMRs in SoS was suggested. We explored DNA methylation status of 28 imprinted DMRs in 31SoS patients with NSD1 defect and found that hypomethylation of IGF2-DMR0 and IG-DMR in a substantial proportion of SoS patients. Luciferase assay revealed that IGF2-DMR0 enhanced transcription from the IGF2 P0 promoter but not the P3 and P4 promoters. Chromatin immunoprecipitation-quantitative PCR (ChIP-qPCR) revealed active enhancer histone modifications at IGF2-DMR0, with high enrichment F I G U R E 2 IGF2-DMR0 enhances the P0 promoter activity of IGF2 in TCL-1 cells. A, Schematic illustration of IGF2 promoters. The broken arrows indicate the transcription start sites (TSSs) of each transcript from the P1, P0, P2, P3, and P4 promoters. The TSSs from P0, P3, and P4 were assigned based on GenBank accession numbers DQ104203.1, NM_000612.6, NM_001291861.2, respectively. IGF2-DMR0 is paternally methylated. Boxes indicate exons. Blue boxes indicate coding regions. The up-arrow shows the putative TATA box. The DNA fragments used in the luciferase assay are shown by thick horizontal lines. B, Structures of the constructs used in the luciferase assay. Luc: firefly luciferase gene. These constructs were transfected into TCL-1 cells along with a Renilla luciferase (pRL-TK) as an internal control. C, P0b activity was enhanced by IGF2-DMR0. The activity of PGV-B P0b was set to 1. D, P3 activity was unaffected by IGF2-DMR0. The activity of PGV-B P3 was set to 1. E, P4 activity was unaffected by IGF2-DMR0. The activity of PGV-B P4 was set to 1. Data represent mean values ± SD of three independent experiments. n.s.: not significant