Poor adherence to seasonal malaria chemoprevention (SMC) might affect the protective effectiveness of SMC. Here, we evaluated the population pharmacokinetic properties of amodiaquine and its active metabolite, desethylamodiaquine, in children receiving SMC under directly observed ideal conditions (n = 136), and the adherence of SMC at an implementation phase in children participating in a case-control study to evaluate SMC effectiveness (n = 869). Amodiaquine and desethylamodiaquine concentration-time profiles were described simultaneously by two-compartment and three-compartment disposition models, respectively. The developed methodology to evaluate adherence showed a sensitivity of 65-71% when the first dose of SMC was directly observed and 71-73% when no doses were observed in a routine programmatic setting. Adherence simulations and measured desethylamodiaquine concentrations in the case-control children showed complete adherence (all doses taken) in < 20% of children. This result suggests that more efforts are needed urgently to improve the adherence to SMC among children in this area.Malaria transmission is highly seasonal in the Sahel, where it represents a major health problem, particularly for children under 5 years of age. Seasonal malaria chemoprevention (SMC) has been recommended by the World Health Organization (WHO) as a preventive strategy since 2013. 1 It consists of the monthly administration of antimalarial medications (sulfadoxine-pyrimethamine (SP) + amodiaquine (AQ)), during the 4-month peak transmission period. 1 A single dose of SP is given together with the first dose of AQ followed by daily dosing of AQ for 2 subsequent days. Distribution strategies vary, but commonly the first day's treatments