Abstract:In the last thirty years, the emergence and progression of biologging technology has led to great advances in marine predator ecology. Large databases of location and dive observations from biologging devices have been compiled for an increasing number of diving predator species (such as pinnipeds, sea turtles, seabirds and cetaceans), enabling complex questions about animal activity budgets and habitat use to be addressed. Central to answering these questions is our ability to correctly identify and quantify … Show more
“…() reveal that the directed horizontal movements in multiple Antarctic pinniped species are associated with longer dive durations, whereas an inverted relationship is noted in blue whales ( Balaenoptera musculus ) with perceived shallow foraging behaviors being characterized by shallow dives and short horizontal movements (DeRuiter et al., ). Future studies may find similar observation models a powerful tool for investigating the dependences of horizontal and vertical movement rates (Carter, Bennett, Embling, Hosegood, & Russell, ).…”
Understanding how, where, and when animals move is a central problem in marine ecology and conservation. Key to improving our knowledge about what drives animal movement is the rising deployment of telemetry devices on a range of free‐roaming species. An increasingly popular way of gaining meaningful inference from an animal's recorded movements is the application of hidden Markov models (HMMs), which allow for the identification of latent behavioral states in the movement paths of individuals. However, the use of HMMs to explore the population‐level consequences of movement is often limited by model complexity and insufficient sample sizes. Here, we introduce an alternative approach to current practices and provide evidence of how the inclusion of prior information in model structure can simplify the application of HMMs to multiple animal movement paths with two clear benefits: (a) consistent state allocation and (b) increases in effective sample size. To demonstrate the utility of our approach, we apply HMMs and adapted HMMs to over 100 multivariate movement paths consisting of conditionally dependent daily horizontal and vertical movements in two species of demersal fish: Atlantic cod (Gadus morhua; n = 46) and European plaice (Pleuronectes platessa; n = 61). We identify latent states corresponding to two main underlying behaviors: resident and migrating. As our analysis considers a relatively large sample size and states are allocated consistently, we use collective model output to investigate state‐dependent spatiotemporal trends at the individual and population levels. In particular, we show how both species shift their movement behaviors on a seasonal basis and demonstrate population space use patterns that are consistent with previous individual‐level studies. Tagging studies are increasingly being used to inform stock assessment models, spatial management strategies, and monitoring of marine fish populations. Our approach provides a promising way of adding value to tagging studies because inferences about movement behavior can be gained from a larger proportion of datasets, making tagging studies more relevant to management and more cost‐effective.
“…() reveal that the directed horizontal movements in multiple Antarctic pinniped species are associated with longer dive durations, whereas an inverted relationship is noted in blue whales ( Balaenoptera musculus ) with perceived shallow foraging behaviors being characterized by shallow dives and short horizontal movements (DeRuiter et al., ). Future studies may find similar observation models a powerful tool for investigating the dependences of horizontal and vertical movement rates (Carter, Bennett, Embling, Hosegood, & Russell, ).…”
Understanding how, where, and when animals move is a central problem in marine ecology and conservation. Key to improving our knowledge about what drives animal movement is the rising deployment of telemetry devices on a range of free‐roaming species. An increasingly popular way of gaining meaningful inference from an animal's recorded movements is the application of hidden Markov models (HMMs), which allow for the identification of latent behavioral states in the movement paths of individuals. However, the use of HMMs to explore the population‐level consequences of movement is often limited by model complexity and insufficient sample sizes. Here, we introduce an alternative approach to current practices and provide evidence of how the inclusion of prior information in model structure can simplify the application of HMMs to multiple animal movement paths with two clear benefits: (a) consistent state allocation and (b) increases in effective sample size. To demonstrate the utility of our approach, we apply HMMs and adapted HMMs to over 100 multivariate movement paths consisting of conditionally dependent daily horizontal and vertical movements in two species of demersal fish: Atlantic cod (Gadus morhua; n = 46) and European plaice (Pleuronectes platessa; n = 61). We identify latent states corresponding to two main underlying behaviors: resident and migrating. As our analysis considers a relatively large sample size and states are allocated consistently, we use collective model output to investigate state‐dependent spatiotemporal trends at the individual and population levels. In particular, we show how both species shift their movement behaviors on a seasonal basis and demonstrate population space use patterns that are consistent with previous individual‐level studies. Tagging studies are increasingly being used to inform stock assessment models, spatial management strategies, and monitoring of marine fish populations. Our approach provides a promising way of adding value to tagging studies because inferences about movement behavior can be gained from a larger proportion of datasets, making tagging studies more relevant to management and more cost‐effective.
“…The study of the at‐sea distribution of marine predators has widened with the development of animal‐attached tags (see Carter et al . for a critical review in pinnipeds). Satellite relay data loggers report information collected by on‐board sensors, via the Argos satellite system, enabling us to collect data from previously inaccessible environments (Boehme et al .…”
The population of Weddell seals (Leptonychotes weddellii) in the southern Weddell Sea is in a unique position on the continental shelf edge, with vast shelf waters to the south, and deep Southern Ocean to the north. We describe sex-related differences in the winter distribution of this population, from data collected by 20 conductivity-temperature-depth satellite relay data loggers deployed in February 2011 at the end of the annual molt. The regional daily speed was calculated, and a state-space model was used to estimate behavioral states to positions along individuals' tracks. GLMMs estimated that males and smaller individuals, diving in shallower water, traveled less far per day of deployment (males 14.6 AE 2.26 km/d, females 18.9 AE 2.42 km/d), and males were estimated to dive in shallower water (males 604 AE 382 m, females 1,875 AE 1,458 m). Males and smaller individuals were also estimated to be more resident; males spent an average 83.4% AE 7.7% of their time in a resident behavioral state, compared to females at 74.1% AE 7.1%. This evidence that male and female Weddell seals in the southern Weddell Sea are adopting different strategies has not been shown elsewhere along their circumpolar distribution.
“…Breath‐hold resting has also been observed in fur seals ( Arctocephalinae ) (Jeanniard‐du‐Dot, Trites, Arnould, Speakman, & Guinet, ) and asymmetrical dive profiles (so‐called drift dives) performed by elephant seals are assumed to represent resting behavior (Crocker, Boeuf, & Costa, ; Watanabe, Baranov, & Miyazaki, ). For harbor and gray seals, U‐shaped dives are typically associated with foraging behavior (Russell et al, ; Thompson et al, ) and a standard 2D dive profile analysis may have categorized the resting dives found here (e.g., in Figure ) as U‐shaped foraging dives due to lack of data on fine‐scale movements (Carter et al, ). This could lead to overestimation of the number of foraging dives.…”
Section: Discussionmentioning
confidence: 99%
“…New state‐space models (SSM), like hidden Markov models (HMM), have the potential of integrating 3D movements and environmental parameters, increasing the power to distinguish behaviors. However, the accuracy of such models to quantify various states of behavior is highly influenced by data resolution (Carter et al, ). Higher‐sampling‐rate sensors, and in particular accelerometers, have proven to be useful for interpreting fine‐scale dive behaviors such as prey capture events (Gallon et al, ; Heerah, Hindell, Guinet, & Charrassin, ; Volpov et al, ).…”
The impact of anthropogenic noise on marine fauna is of increasing conservation concern with vessel noise being one of the major contributors. Animals that rely on shallow coastal habitats may be especially vulnerable to this form of pollution.
Very limited information is available on how much noise from ship traffic individual animals experience, and how they may react to it due to a lack of suitable methods. To address this, we developed long‐duration audio and 3D‐movement tags (DTAGs) and deployed them on three harbor seals and two gray seals in the North Sea during 2015–2016.
These tags recorded sound, accelerometry, magnetometry, and pressure continuously for up to 21 days. GPS positions were also sampled for one seal continuously throughout the recording period. A separate tag, combining a camera and an accelerometer logger, was deployed on two harbor seals to visualize specific behaviors that helped interpret accelerometer signals in the DTAG data.
Combining data from depth, accelerometer, and audio sensors, we found that animals spent 6.6%–42.3% of the time hauled out (either on land or partly submerged), and 5.3%–12.4% of their at‐sea time resting at the sea bottom, while the remaining time was used for traveling, resting at surface, and foraging. Animals were exposed to audible vessel noise 2.2%–20.5% of their time when in water, and we demonstrate that interruption of functional behaviors (e.g., resting) in some cases coincides with high‐level vessel noise. Two‐thirds of the ship noise events were traceable by the AIS vessel tracking system, while one‐third comprised vessels without AIS.
This preliminary study demonstrates how concomitant long‐term continuous broadband on‐animal sound and movement recordings may be an important tool in future quantification of disturbance effects of anthropogenic activities at sea and assessment of long‐term population impacts on pinnipeds.
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