Abstract:Sericin is a kind of water-soluble protein expressed specifically in the middle silk gland of Bombyx mori. When the sericin-1 gene promoter was cloned and a transgenic vector was constructed to express a foreign protein, a specific Helitron, Bmhel-8, was identified in the sericin-1 gene promoter sequence in some genotypes of Bombyx mori and Bombyx mandarina. Given that the Bmhel-8 Helitron transposon was present only in some genotypes, it could be the source of allelic variation in the sericin-1 promoter. The … Show more
“…Indeed, we observed that Helitrons represent 50% of all cases. These elements have been extensively reported on promoter regions of other eukaryotic species (102)(103)(104)(105), in which a few cases of embedded TFBSs were reported (106,107). Here, we demonstrated that part of the enrichment in TEs observed at the promoter region of ORs might be due to the exaptation of TFBSs mostly derived from Helitrons.…”
Section: Or Genes Are Enriched With Te Insertions At 2 Kb Upstream Re...supporting
confidence: 57%
“…Helitrons have been extensively reported as a source of TFBSs when located at the promoter region of genes. In the bat Myotis lucifugus , 1.4% of the transcripts from the salivary gland have Helitron -derived sequences, for which ∼6% correspond to promoters (103). In the plant Brassica napus , an Helitron insertion disrupts the ancestral promoter of the gene BnSP11-1 , altering the mating system of the populations carrying this insertion, which in turn contributes to the adaptation and speciation (119).…”
BackgroundThe host shift in insects has been considered a key process with potential to collaborate with ecological speciation. Both genomics and transcriptomics variation has been attributed to such process, in which gene families with functions for host location, acceptance and usage have been proposed to evolve. In this context, cactophilicDrosophilaspecies are an excellent model to study host shift effects, since they use a wide-range of cacti as hosts, and many species have cacti-hosts preference. Despite the potential adaptive role of TEs by generating genetic variability between species and populations, the extent of TEs′ contribution to host shift remains unexplored.ResultsHere, we performed genomics and transcriptomics analyses in seven genomes of cactophilic species/subspecies to investigate how TEs interact with genes likely to be associated with host shift. Our results revealed transposition bursts between species, and an enrichment of TEs at promoter regions of host shift-related genes. Pairwise differential expression analysis between species with different preferential hosts in larvae and head tissues demonstrated divergence on gene expression associated with host location in head, whereas for the larvae we found higher differential expression of genes related to usage/detoxification. Although TEs′ presence does not affect overall gene expression, we observed 2.1% of genes generating gene-TE chimeric transcripts, including those with function affecting host preference. In addition, Helitrons were often observed interacting with genes as a cis-regulatory element.ConclusionsOur combined genomics and transcriptomics approaches provide new insights regarding the evolutionary role of TEs on the context of ecological speciation.
“…Indeed, we observed that Helitrons represent 50% of all cases. These elements have been extensively reported on promoter regions of other eukaryotic species (102)(103)(104)(105), in which a few cases of embedded TFBSs were reported (106,107). Here, we demonstrated that part of the enrichment in TEs observed at the promoter region of ORs might be due to the exaptation of TFBSs mostly derived from Helitrons.…”
Section: Or Genes Are Enriched With Te Insertions At 2 Kb Upstream Re...supporting
confidence: 57%
“…Helitrons have been extensively reported as a source of TFBSs when located at the promoter region of genes. In the bat Myotis lucifugus , 1.4% of the transcripts from the salivary gland have Helitron -derived sequences, for which ∼6% correspond to promoters (103). In the plant Brassica napus , an Helitron insertion disrupts the ancestral promoter of the gene BnSP11-1 , altering the mating system of the populations carrying this insertion, which in turn contributes to the adaptation and speciation (119).…”
BackgroundThe host shift in insects has been considered a key process with potential to collaborate with ecological speciation. Both genomics and transcriptomics variation has been attributed to such process, in which gene families with functions for host location, acceptance and usage have been proposed to evolve. In this context, cactophilicDrosophilaspecies are an excellent model to study host shift effects, since they use a wide-range of cacti as hosts, and many species have cacti-hosts preference. Despite the potential adaptive role of TEs by generating genetic variability between species and populations, the extent of TEs′ contribution to host shift remains unexplored.ResultsHere, we performed genomics and transcriptomics analyses in seven genomes of cactophilic species/subspecies to investigate how TEs interact with genes likely to be associated with host shift. Our results revealed transposition bursts between species, and an enrichment of TEs at promoter regions of host shift-related genes. Pairwise differential expression analysis between species with different preferential hosts in larvae and head tissues demonstrated divergence on gene expression associated with host location in head, whereas for the larvae we found higher differential expression of genes related to usage/detoxification. Although TEs′ presence does not affect overall gene expression, we observed 2.1% of genes generating gene-TE chimeric transcripts, including those with function affecting host preference. In addition, Helitrons were often observed interacting with genes as a cis-regulatory element.ConclusionsOur combined genomics and transcriptomics approaches provide new insights regarding the evolutionary role of TEs on the context of ecological speciation.
“…Huang et al . cloned a specific helitron, Bmhel‐8, from the sericin‐1 gene promoter sequence and showed that Bmhel‐8 exhibits enhancer activity in a sericin‐1 promoter‐driven gene expression system, but does not influence tissue‐specific expression of sericin‐1 (Huang et al ., ). Lu et al .…”
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