The complete mitochondrial genome of the
            <i>Clarias fuscus</i>
            (Siluriformes, Clariidae)

Yang, Huirong; Sun, Jijia; Zhao, Hongbin; Chen, Yibin; Yang, Zituo; Li, Guifeng; Liu, Li

doi:10.3109/19401736.2014.945544

Cited by 13 publications

(7 citation statements)

References 4 publications

Supporting

Mentioning

Contrasting

Order By: Relevance

“…Gene arrangement and distribution of the three croakers were canonically identical and consistent with other vertebrates [ 37 , 38 , 39 , 40 , 41 , 42 , 43 , 44 , 45 ] but much different from the Mollusca [ 46 ]. However, the commonly discovered tRNA cluster Glu-Thr-Pro was not present in the three studied croakers or the other 9 studied teleosts [ 47 ], which covered Perciformes, Cypriniformes, and Siluriformes [ 38 , 39 , 40 , 41 , 42 , 43 , 44 , 45 ]. The cluster tRNA-Glu - cyb-tRNA-Thr-Pro was available instead [ 48 ].…”

Section: Resultsmentioning

confidence: 52%

Characterization of the Complete Mitochondrial Genome Sequences of Three Croakers (Perciformes, Sciaenidae) and Novel Insights into the Phylogenetics

Yang

Xia

Zhang

et al. 2018

IJMS

Self Cite

View full text Add to dashboard Cite

The three croakers (Nibea coibor, Protonibea diacanthus and Argyrosomus amoyensis, Perciformes, Sciaenidae) are important commercial species inhabiting the Eastern Indian Ocean and Western Pacific. Molecular data employed in previous research on phylogenetic reconstruction have not been adequate and complete, and systematic and comprehensive phylogenetic relationships for these fish are unresolved. We sequenced the complete mitochondrial genomes of the three croakers using next-generation sequencing for the first time. We analyzed the composition and phylogenies between 19 species in the family Sciaenidae using the mitochondrial protein coding sequences of 204 species in the Series Eupercaria. We present the characterization of the complete mitochondrial genome sequences of the three croakers. Gene arrangement and distribution of the three croakers are canonically identical and consistent with other vertebrates. We found that the family Sciaenidae is an independent branch that is isolated from the order Perciformes and does not belong to any extant classification. Therefore, this family is expected to belong to a new classification at the order level and needs further analysis. The evolution of Sciaenidae has lagged far behind the Perciformes differentiation. This study presents a novel insight into the phylogenetics of the family Sciaenidae from the order Perciformes and facilitates additional studies on the evolution and phylogeny of Series Eupercaria.

show abstract

Section: Resultsmentioning

confidence: 52%

Characterization of the Complete Mitochondrial Genome Sequences of Three Croakers (Perciformes, Sciaenidae) and Novel Insights into the Phylogenetics

Yang

Xia

Zhang

et al. 2018

IJMS

Self Cite

View full text Add to dashboard Cite

show abstract

“…Various genetic markers (glutamic acid transfer RNA, cytochrome b, and cytochrome c oxidase subunit 1) were used to elucidate the diversity, evolutionary relationship, population structure, and cryptic diversity of Clarias species [ 23 , 24 , 25 ]. Later on, the complete mitogenomes and whole-genome sequences were analyzed to comprehend the in-depth phylogenetic relationship of Clarias species [ 26 , 27 , 28 , 29 , 30 , 31 , 32 , 33 ]. Further, with the flourishment of molecular tools in biodiversity research, the non-invasive environmental DNA (eDNA) was also examined by qPCR assay to reveal the genetic diversity of north African sharptooth catfish, C. gariepinus [ 34 ].…”

Section: Introductionmentioning

confidence: 99%

Mitochondriomics of Clarias Fishes (Siluriformes: Clariidae) with a New Assembly of Clarias camerunensis: Insights into the Genetic Characterization and Diversification

Alwis

Kundu

Gietbong

et al. 2023

Life

View full text Add to dashboard Cite

The mitogenome of an endemic catfish Clarias camerunensis was determined from the Cameroon water. This circular mitogenome was 16,511 bp in length and comprised 13 protein-coding genes, 2 ribosomal RNAs, 22 transfer RNAs, and a single AT-rich control region. The heavy strand accommodates 28 genes, whereas the light strand is constituted by ND6 and eight transfer RNA (tRNA) genes. The C. camerunensis mitochondrial genome is AT biased (56.89%), as showcased in other Clarias species. The comparative analyses revealed that most of the Clarias species have 6 overlapping and 11 intergenic spacer regions. Most of the PCGs were initiated and terminated with the ATG start codon and TAA stop codon, respectively. The tRNAs of C. camerunensis folded into the distinctive cloverleaf secondary structure, except trnS1. The placement of the conserved domains in the control region was similar in all the Clarias species with highly variable nucleotides in CSB-I. Both maximum likelihood and Bayesian-based matrilineal phylogenies distinctly separated all Clarias species into five clades on the basis of their known distributions (South China, Sundaland, Indochina, India, and Africa). The TimeTree analysis revealed that the two major clades (Indo-Africa and Asia) of Clarias species might have diverged during the Paleogene (≈28.66 MYA). Our findings revealed the separation of Indian species (C. dussumieri) and African species (C. camerunensis and Clarias gariepinus) took place during the Paleogene, as well as the South Chinese species (Clarias fuscus) and Sundaland species (Clarias batrachus) splits from the Indochinese species (Clarias macrocephalus) during the Neogene through independent colonization. This pattern of biotic relationships highlights the influence of topography and geological events in determining the evolutionary history of Clarias species. The enrichment of mitogenomic data and multiple nuclear loci from their native range or type locality will confirm the true diversification of Clarias species in African and Asian countries.

show abstract

“…The overlapping of nucleotides between adjacent genes is a common characteristic found in teleost mitogenomes, which aids in compacting the mitogenomes [30,36]. The overlapping regions between ND4L/ND4 and ATP8/ATP6 were identi ed as common features found in Melanotaenia species [6,21,[26][27][28][29] and other teleosts [37][38][39][40]. In addition, in this study showed that greater diversity in both location and intergenic nucleotide lengths compared to the overlaps.…”

Section: Discussionmentioning

confidence: 59%

Insights into structural features and phylogenetic implications of the complete mitochondrial genome of Fasin rainbow fish (Melanotaenia fasinensis)

Marnis,

Syahputra,

Kadarusman

et al. 2024

Preprint

View full text Add to dashboard Cite

The Fasin Rainbow fish, scientifically known as Melanotaenia fasinensis, is highly sought after by aquarium enthusiasts due to its vibrant colors and adaptability to artificial aquatic environments. This species is endemic to the karst landscape of the Bird’s Head region in Papua, Indonesia, and belongs to the Melanotaeniidae family. Discovered relatively recently in 2010, it has been designated as endangered by the International Union for Conservation of Nature (IUCN) in 2021. However, there is currently insufficient data regarding its phylogenetic positioning. To address this gap, our study employed next-generation sequencing to analyze the entire mitochondrial genome of M. fasinensis. The mitochondrial genome consists of 13 protein-coding genes, 22 transfer RNA genes, and two ribosomal RNA genes, with a total length of 16,731 base pairs. The base composition of the mitogenome revealed percentages of 27.76% adenine (A), 27.34% thymine (T), 16.15% guanine (G), and 28.75% cytosine (C). Our phylogenetic analysis, based on nucleotide sequences mitogenome, indicated that M. fasinensis occupies a relatively basal position within the Melanotaenia genus. This study provides valuable molecular insights for further exploration of phylogeography and evolutionary history, not only for M. fasinensis but also for other members of the Melanotaenia genus.

show abstract

The complete mitochondrial genome of the Clarias fuscus (Siluriformes, Clariidae)

Cited by 13 publications

References 4 publications

Characterization of the Complete Mitochondrial Genome Sequences of Three Croakers (Perciformes, Sciaenidae) and Novel Insights into the Phylogenetics

Characterization of the Complete Mitochondrial Genome Sequences of Three Croakers (Perciformes, Sciaenidae) and Novel Insights into the Phylogenetics

Mitochondriomics of Clarias Fishes (Siluriformes: Clariidae) with a New Assembly of Clarias camerunensis: Insights into the Genetic Characterization and Diversification

Insights into structural features and phylogenetic implications of the complete mitochondrial genome of Fasin rainbow fish (Melanotaenia fasinensis)

Contact Info

Product

Resources

About