Daclatasvir (DCV; BMS-790052) is a hepatitis C virus (HCV) NS5A replication complex inhibitor (RCI) with picomolar to low nanomolar potency and broad genotypic coverage in vitro. Viral RNA declines have been observed in the clinic for both alpha interferon-ribavirin (IFN-␣-RBV) and IFN-RBV-free regimens that include DCV. Follow-up specimens (up to 6 months) from selected subjects treated with DCV in 14-day monotherapy studies were analyzed for genotype and phenotype. Variants were detected by clonal sequencing in specimens from baseline and were readily detected by population sequencing following viral RNA breakthrough and posttreatment. The major amino acid substitutions generating resistance in vivo were at residues M28, Q30, L31, and Y93 for genotype 1a (GT-1a) and L31 and Y93 for GT-1b, similar to the resistance substitutions observed with the in vitro replicon system. The primary difference in the resistance patterns observed in vitro and in vivo was the increased complexity of linked variant combinations observed in clinical specimens. Changes in the percentage of individual variants were observed during follow-up; however, the overall percentage of variants in the total population persisted up to 6 months. Our results suggest that during the 14-day monotherapy, most wild-type virus was eradicated by DCV. After the end of DCV treatment, viral fitness, rather than DCV resistance, probably determines which viral variants emerge as dominant in populations.
D aclatasvir (DCV; BMS-790052) is a hepatitis C virus (HCV)NS5A replication complex inhibitor (RCI) with picomolar to low nanomolar potency and broad genotypic coverage in vitro. In the replicon system, 50% (i.e., half-maximal) effective concentrations (EC 50 s) of DCV are 50 and 9 pM against genotype 1a (GT1a) and GT-1b, respectively (1, 2). Its in vitro potency translated into anti-HCV activity in the clinic. Initial viral RNA declines with high sustained virologic response (SVR) have been achieved for both interferon-ribavirin (IFN-RBV) and IFN-RBV-free regimens in combination therapies (1,(3)(4)(5)(6)(7)(8).In a 14-day multiple-ascending-dose (MAD) monotherapy study, chronically infected patients, treated with DCV at 1, 10, 30, 60, and 100 mg QD (once daily) or 30 mg BID (twice daily) for 14 days (4 subjects per cohort), generally experienced rapid and marked viral load declines (3, 4). Although viral breakthrough (VBT) was observed for both GT-1a-and -1b-infected patients, RNA declined below the level of detection (Ͻ10 IU/ml) in several GT-1b-infected patients, and viral RNA remained detectable in the majority of GT-1a-infected patients (3, 4).Genome variants of HCV NS5A that emerged in viral specimens collected during and after treatment with DCV in vivo (clinical cases) and in vitro (replicons) are similar (1, 2, 4, 9). To date, all amino acid substitutions observed in vitro that are associated with resistance to DCV and its analogs synthesized by us mapped to the N-terminal region of NS5A (1, 2, 9, 10). For GT-1b, the major resistance substitutions ...