Isolation, gram staining and catalase testEach sample was diluted and spread onto M17 and MRS media (Difco Laboratories, Detroit, Michigan, USA). Plates were incubated under aerobiosis at 37 °C for 48h [2,3]. Isolation, Gram staining and catalase test were performed according to Mac Faddin [4] and Standard I D F [2].
DNA extractionPre-treatment of bacterial cells was performed according to Castro et al. [1]. The total DNA from each sample was extracted with the Wizard SV Genomic DNA Purification System (Promega Corporation, Madison, Wisconsin, USA), following manufacturer's instructions.
16S-23S ITS amplificationGenus identification was performed by amplification of the intergenic spacer region from 16S-23S genes. Internal transcript spacer 1 (ITS 1) was assessed by primers 16-1 and 23-1B. Methodology was performed according to Tilsala, Timisjarvi e Alatossava [5].
(GTG)5 rep-PCR finger printingGenotypic differentiation amongst samples was performed in accordance to Gevers, Huys and Swings (2001). rep-PCR was performed using the (GTG)5 PCR as primer. DNA band profiles obtained by the PCR reaction were analyzed in the BioNumerics v6.5 (Applied Maths, Kortrijk, Belgium). Genetic similarity values were calculated by Pearson correlation and used to build a dendrogram by UPGMA (Unweighted Pair Group with Arithmetic Mean).