Neanderthals were once widespread across Europe and western Asia. They also penetrated into the Altai Mountains of southern Siberia, but the geographical origin of these populations and the timing of their dispersal have remained elusive. Here we describe an archaeological assemblage from Chagyrskaya Cave, situated in the Altai foothills, where around 90,000 Middle Paleolithic artifacts and 74 Neanderthal remains have been recovered from deposits dating to between 59 and 49 thousand years ago (age range at 95.4% probability). Environmental reconstructions suggest that the Chagyrskaya hominins were adapted to the dry steppe and hunted bison. Their distinctive toolkit closely resembles Micoquian assemblages from central and eastern Europe, including the northern Caucasus, more than 3,000 kilometers to the west of Chagyrskaya Cave. At other Altai sites, evidence of earlier Neanderthal populations lacking associated Micoquian-like artifacts implies two or more Neanderthal incursions into this region. We identify eastern Europe as the most probable ancestral source region for the Chagyrskaya toolmakers, supported by DNA results linking the Neanderthal remains with populations in northern Croatia and the northern Caucasus, and providing a rare example of a long-distance, intercontinental population movement associated with a distinctive Paleolithic toolkit.

Genomic analyses of Neanderthals have previously provided insights into their population history and relationship to modern humans1–8, but the social organization of Neanderthal communities remains poorly understood. Here we present genetic data for 13 Neanderthals from two Middle Palaeolithic sites in the Altai Mountains of southern Siberia: 11 from Chagyrskaya Cave9,10 and 2 from Okladnikov Cave11—making this one of the largest genetic studies of a Neanderthal population to date. We used hybridization capture to obtain genome-wide nuclear data, as well as mitochondrial and Y-chromosome sequences. Some Chagyrskaya individuals were closely related, including a father–daughter pair and a pair of second-degree relatives, indicating that at least some of the individuals lived at the same time. Up to one-third of these individuals’ genomes had long segments of homozygosity, suggesting that the Chagyrskaya Neanderthals were part of a small community. In addition, the Y-chromosome diversity is an order of magnitude lower than the mitochondrial diversity, a pattern that we found is best explained by female migration between communities. Thus, the genetic data presented here provide a detailed documentation of the social organization of an isolated Neanderthal community at the easternmost extent of their known range.

Here, we apply geometric-morphometric shape analysis to Middle Paleolithic bone retouchers from Chagyrskaya Cave in the Altai Mountains of southern Siberia. The cave contains evidence of the easternmost manifestation of the Micoquian industry, associated with Neanderthals at end of MIS4 and the beginning of MIS3. Taphonomic and scar pattern analyses were performed first on random samples exhibiting appropriate characteristics. Several retouchers produced on intentionally modified blanks were identified in our sample, suggesting that some of the Chagyrskaya Cave bone retouchers can be described as formal tools. All retouchers from Chagyrskaya Cave exhibit a similar general morphology. The most variable group is comprised of complete retouchers without blank modifications. Retouchers exhibiting minor damage affect the general pattern of variability and it is not possible to identify them only by means of geometric-morphometric shape analysis. Complete retouchers with blank modifications fall within the range of variability of complete retouchers without blank modification, suggesting intentional shaping of blanks to conform to a standard template. The range of variability of the bone retouchers does not differ significantly from that of the most highly modified lithic artifacts at Chagyrskayaplano-convex bifaceswhich may indicate intentional shape control for such artifacts. Geometric-morphometric analysis indicates that the anatomical origin of bone blanks does not significantly influence the retouchers' shape, which may point to strict blank selection and, at the same time, intentional modification. Our results raise questions regarding the integration of retouchers into a complex, multidimensional "chaine-op´eratoire" as well as the nature of Neanderthal cognitive abilities. Geometric-morphometric shape analysis represents a major step forward in the study of prehistoric retouchers.

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