Pan-genomes from large natural populations can capture genetic diversity and reveal genomic complexity. Using de novo long-read assembly, we generated a graph-based super pan-genome of rice consisting of a 251-accession panel comprising both cultivated and wild species of Asian and African rice. Our pan-genome reveals extensive structural variations (SVs) and gene presence/absence variations. Additionally, our pan-genome enables the accurate identification of nucleotide-binding leucine-rich repeat genes and characterization of their inter- and intraspecific diversity. Moreover, we uncovered grain weight-associated SVs which specify traits by affecting the expression of their nearby genes. We characterized genetic variants associated with submergence tolerance, seed shattering and plant architecture and found independent selection for a common set of genes that drove adaptation and domestication in Asian and African rice. This super pan-genome facilitates pinpointing of lineage-specific haplotypes for trait-associated genes and provides insights into the evolutionary events that have shaped the genomic architecture of various rice species.
The superfluid mixture of interacting Bose and Fermi species is a remarkable many-body quantum system. Dilute degenerate atomic gases, especially for two species of distinct masses, are excellent candidates for exploring fundamental features of superfluid mixture. However, producing a mass-imbalance Bose-Fermi superfluid mixture, providing an unambiguous visual proof of two-species superfluidity and probing inter-species interaction effects remain challenging. Here, we report the realization of a two-species superfluid of lithium-6 and potassium-41. By rotating the dilute gases, we observe the simultaneous existence of vortex lattices in both species, and thus present a definitive visual evidence for the simultaneous superfluidity of the two species.Pronounced effects of the inter-species interaction are demonstrated through a series of precision measurements on the formation and decay of two-species vortices. Our system provides a new platform for studying novel macroscopic quantum phenomena in vortex matter of interacting species.
scite is a Brooklyn-based organization that helps researchers better discover and understand research articles through Smart Citations–citations that display the context of the citation and describe whether the article provides supporting or contrasting evidence. scite is used by students and researchers from around the world and is funded in part by the National Science Foundation and the National Institute on Drug Abuse of the National Institutes of Health.