The mammalian 5-AMP-activated protein kinase (AMPK) is related to a growing family of protein kinases in yeast and plants that are regulated by nutritional stress. We find the most prominent expressed form of the hepatic AMPK catalytic subunit (␣ 1 ) is distinct from the previously cloned kinase subunit (␣ 2 ). The ␣ 1 (548 residues) and ␣ 2 (552 residues) isoforms have 90% amino acid sequence identity within the catalytic core but only 61% identity elsewhere. The tissue distribution of the AMPK activity most closely parallels the low abundance 6-kilobase ␣ 1 mRNA distribution and the ␣ 1 immunoreactivity rather than ␣ 2 , with substantial amounts in kidney, liver, lung, heart, and brain. Both ␣ 1 and ␣ 2 isoforms are stimulated by AMP and contain noncatalytic  and ␥ subunits. The liver ␣ 1 isoform accounts for approximately 94% of the enzyme activity measured using the SAMS peptide substrate. The tissue distribution of the ␣ 2 immunoreactivity parallels the ␣ 2 8.5-kilobase mRNA and is most prominent in skeletal muscle, heart, and liver. Isoforms of the  and ␥ subunits present in the human genome sequence reveal that the AMPK consists of a family of isoenzymes.The 5Ј-AMP-activated protein kinase (AMPK) 1 was initially identified as a protein kinase regulating hydroxymethylglutaryl-CoA reductase (1). Subsequently, the AMPK was shown to phosphorylate hepatic acetyl-CoA carboxylase (2) and adipose hormone-sensitive lipase (3). The AMPK appears to act as a metabolic stress-sensing protein kinase switching off biosynthetic pathways when cellular ATP levels are depleted and when 5Ј-AMP rises in response to fuel limitation and/or hypoxia (4). Partial amino acid sequencing of hepatic AMPK (5, 6) revealed that it consists of 3 subunits, the catalytic subunit ␣ (63 kDa), and two noncatalytic subunits,  (40 kDa) and ␥ (38 kDa).The AMPK is a member of the yeast SNF1 protein kinase subfamily that includes protein kinases present in plants, nematodes, and humans (5-9). The AMPK catalytic subunit, ␣, has strong sequence identity to the catalytic domain of the yeast protein kinase SNF1, which is involved in the induction of invertase (SUC2) under conditions of nutritional stress due to glucose starvation (10). Both Snf1p and the AMPK require phosphorylation by an activating protein kinase for full activity (11). The sequence relationship between Snf1p and AMPK led to the finding that these enzymes share functional similarities, both phosphorylating and inactivating yeast acetyl-CoA carboxylase (5,11,12). Nevertheless, the AMPK does not complement SNF1 in yeast (11), indicating that their full range of functions are not identical. The noncatalytic  and ␥ subunits of AMPK are also related to proteins that interact with Snf1p; the  subunit is related to the SIP1/SIP2/GAL83 family of transcription regulators and the ␥ subunit to SNF4 (also called CAT3) (6, 13). EXPERIMENTAL PROCEDURESPeptide Sequencing-Peptides were derived from rat and porcine ␣ 1 subunit of the AMPK, by in situ proteolysis (5), and sequenced on either an Ap...
Plant resistance proteins (R proteins) recognize corresponding pathogen avirulence (Avr) proteins either indirectly through detection of changes in their host protein targets or through direct R-Avr protein interaction. Although indirect recognition imposes selection against Avr effector function, pathogen effector molecules recognized through direct interaction may overcome resistance through sequence diversification rather than loss of function. Here we show that the flax rust fungus AvrL567 genes, whose products are recognized by the L5, L6, and L7 R proteins of flax, are highly diverse, with 12 sequence variants identified from six rust strains. Seven AvrL567 variants derived from Avr alleles induce necrotic responses when expressed in flax plants containing corresponding resistance genes (R genes), whereas five variants from avr alleles do not. Differences in recognition specificity between AvrL567 variants and evidence for diversifying selection acting on these genes suggest they have been involved in a gene-specific arms race with the corresponding flax R genes. Yeast two-hybrid assays indicate that recognition is based on direct R-Avr protein interaction and recapitulate the interaction specificity observed in planta. Biochemical analysis of Escherichia coli-produced AvrL567 proteins shows that variants that escape recognition nevertheless maintain a conserved structure and stability, suggesting that the amino acid sequence differences directly affect the R-Avr protein interaction. We suggest that direct recognition associated with high genetic diversity at corresponding R and Avr gene loci represents an alternative outcome of plant-pathogen coevolution to indirect recognition associated with simple balanced polymorphisms for functional and nonfunctional R and Avr genes.avirulence protein ͉ resistance protein P lants resist disease through a variety of preformed and induced barriers to infection. Among these is a genetically determined pathogen recognition system controlled by host resistance genes (R genes). In this gene-for-gene resistance system, plant R genes confer resistance to pathogen strains carrying corresponding avirulence (Avr) genes (so-called because their presence prevents growth on resistant plants). The recognition event involving the products of the R and Avr genes triggers host defense responses, including a localized host cell death or hypersensitive response (HR) that limits the spread of the pathogen from the infection site. Most known plant resistance proteins (R proteins) contain nucleotide binding site (NBS) and leucine-rich repeat (LRR) domains, with the latter implicated in pathogen recognition (1). In contrast, Avr proteins are diverse, and many have pathogenicity effector functions that play important roles in enhancing infection (2). The antagonistic relationship between R and Avr genes results in coevolutionary conflict as selection favors evolution of resistance in plants and virulence in their pathogens.The Arabidopsis RPM1, RPS2, and RPS5 NBS-LRR-type R proteins confer r...
Importin-␣ is the nuclear import receptor that recognizes cargo proteins carrying conventional basic monopartite and bipartite nuclear localization sequences (NLSs) and facilitates their transport into the nucleus. Bipartite NLSs contain two clusters of basic residues, connected by linkers of variable lengths. To determine the structural basis of the recognition of diverse bipartite NLSs by mammalian importin-␣, we co-crystallized a non-autoinhibited mouse receptor protein with peptides corresponding to the NLSs from human retinoblastoma protein and Xenopus laevis phosphoprotein N1N2, containing diverse sequences and lengths of the linker. We show that the basic clusters interact analogously in both NLSs, but the linker sequences adopt different conformations, whereas both make specific contacts with the receptor. The available data allow us to draw general conclusions about the specificity of NLS binding by importin-␣ and facilitate an improved definition of the consensus sequence of a conventional basic/bipartite NLS (KRX 10 -12 KRRK) that can be used to identify novel nuclear proteins.Nucleocytoplasmic transport occurs through nuclear pore complexes, large proteinaceous structures that penetrate the double lipid layer of the nuclear envelope. Most macromolecules require an active, signal-mediated transport process that enables the passage of particles up to 25 nm in diameter (ϳ25 MDa). The best characterized nuclear targeting signals are the conventional nuclear localization sequences (NLSs) 1 that contain one or more clusters of basic amino acids (1). The NLSs fall into two distinct classes termed monopartite NLSs, containing a single cluster of basic amino acids, and bipartite NLSs, comprising two basic clusters separated by a spacer. Despite the variability, the conventional basic NLSs are recognized by the same receptor protein termed importin or karyopherin, a heterodimer of ␣ and  subunits (for recent reviews, see Refs. 2-4). Importin-␣ (Imp␣) contains the NLSbinding site, and importin- (Imp) is responsible for the translocation of the importin-substrate complex through the nuclear pore complex. Once inside the nucleus, Ran-GTP binds to Imp and causes the dissociation of the import complex. Imp␣ becomes autoinhibited, and both importin subunits return to the cytoplasm separately without the import cargo. The directionality of nuclear import is conferred by an asymmetric distribution of the GTP-and GDP-bound forms of Ran between the cytoplasm and the nucleus. This distribution is in turn controlled by various Ran-binding regulatory proteins.Imp␣ consists of two structural and functional domains, a short basic N-terminal Imp-binding domain (5-7) and a large NLS-binding domain built of armadillo (Arm) repeats (8). The structural basis of monopartite and bipartite NLS recognition by Imp␣ has been studied crystallographically in yeast and mouse Imp␣ proteins (9 -11). The two basic clusters of the bipartite NLSs bind to two separate binding sites on Imp␣, involving Arm repeats 1-4 and 4 -8, respectivel...
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