To develop a fully data-driven retrospective intrascan motion-correction framework for volumetric brain MRI at ultrahigh field (7 Tesla) that includes modeling of pose-dependent changes in polarizing magnetic (B 0 ) fields. Theory and Methods: Tissue susceptibility induces spatially varying B 0 distributions in the head, which change with pose. A physics-inspired B 0 model has been deployed to model the B 0 variations in the head and was validated in vivo. This model is integrated into a forward parallel imaging model for imaging in the presence of motion. Our proposal minimizes the number of added parameters, enabling the developed framework to estimate dynamic B 0 variations from appropriately acquired data without requiring navigators. The effect on data-driven motion correction is validated in simulations and in vivo. Results:The applicability of the physics-inspired B 0 model was confirmed in vivo. Simulations show the need to include the pose-dependent B 0 fields in the reconstruction to improve motion-correction performance and the feasibility of estimating B 0 evolution from the acquired data. The proposed motion and B 0 correction showed improved image quality for strongly corrupted data at 7 Tesla in simulations and in vivo. Conclusion:We have developed a motion-correction framework that accounts for and estimates pose-dependent B 0 fields. The method improves current state-of-the-art data-driven motion-correction techniques when B 0 dependencies cannot be neglected. The use of a compact physics-inspired B 0 model together with leveraging the parallel imaging encoding redundancy and previously proposed optimized sampling patterns enables a purely data-driven approach.
Purpose The MP2RAGE sequence is typically optimized for either T1‐weighted uniform image (UNI) or gray matter–dominant fluid and white matter suppression (FLAWS) contrast images. Here, the purpose was to optimize an MP2RAGE protocol at 7 Tesla to provide UNI and FLAWS images simultaneously in a clinically applicable acquisition time at <0.7 mm isotropic resolution. Methods Using the extended phase graph formalism, the signal evolution of the MP2RAGE sequence was simulated incorporating T2 relaxation, diffusion, RF spoiling, and B1+ variability. Flip angles and TI were optimized at different TRs (TRMP2RAGE) to produce an optimal contrast‐to‐noise ratio for UNI and FLAWS images. Simulation results were validated by comparison to MP2RAGE brain scans of 5 healthy subjects, and a final protocol at TRMP2RAGE = 4000 ms was applied in 19 subjects aged 8–62 years with and without epilepsy. Results FLAWS contrast images could be obtained while maintaining >85% of the optimal UNI contrast‐to‐noise ratio. Using TI1/TI2/TRMP2RAGE of 650/2280/4000 ms, 6/8 partial Fourier in the inner phase‐encoding direction, and GRAPPA factor = 4 in the other, images with 0.65 mm isotropic resolution were produced in <7.5 min. The contrast‐to‐noise ratio was around 20% smaller at TRMP2RAGE = 4000 ms compared to that at TRMP2RAGE = 5000 ms; however, the 20% shorter duration makes TRMP2RAGE = 4000 ms a good candidate for clinical applications example, pediatrics. Conclusion FLAWS and UNI images could be obtained in a single scan with 0.65 mm isotropic resolution, providing a set of high‐contrast images and full brain coverage in a clinically applicable scan time. Images with excellent anatomical detail were demonstrated over a wide age range using the optimized parameter set.
Purpose This work proposes a novel RF pulse design for parallel transmit (pTx) systems to obtain uniform saturation of semisolid magnetization for magnetization transfer (MT) contrast in the presence of transmit field B1+ inhomogeneities. The semisolid magnetization is usually modeled as being purely longitudinal, with the applied B1+ field saturating but not rotating its magnetization; thus, standard pTx pulse design methods do not apply. Theory and Methods Pulse design for saturation homogeneity (PUSH) optimizes pTx RF pulses by considering uniformity of root‐mean squared B1+, B1normalrms, which relates to the rate of semisolid saturation. Here we considered designs consisting of a small number of spatially non‐selective sub‐pulses optimized over either a single 2D plane or 3D. Simulations and in vivo experiments on a 7T Terra system with an 8‐TX Nova head coil in five subjects were carried out to study the homogenization of B1normalrms and of the MT contrast by acquiring MT ratio maps. Results Simulations and in vivo experiments showed up to six and two times more uniform B1normalrms compared to circular polarized (CP) mode for 2D and 3D optimizations, respectively. This translated into 4 and 1.25 times more uniform MT contrast, consistently for all subjects, where two sub‐pulses were enough for the implementation and coil used. Conclusion The proposed PUSH method obtains more uniform and higher MT contrast than CP mode within the same specific absorption rate (SAR) budget.
PurposeTo improve motion robustness of functional fetal MRI scans by developing an intrinsic real‐time motion correction method. MRI provides an ideal tool to characterize fetal brain development and growth. It is, however, a relatively slow imaging technique and therefore extremely susceptible to subject motion, particularly in functional MRI experiments acquiring multiple Echo‐Planar‐Imaging‐based repetitions, for example, diffusion MRI or blood‐oxygen‐level‐dependency MRI.MethodsA 3D UNet was trained on 125 fetal datasets to track the fetal brain position in each repetition of the scan in real time. This tracking, inserted into a Gadgetron pipeline on a clinical scanner, allows updating the position of the field of view in a modified echo‐planar imaging sequence. The method was evaluated in real‐time in controlled‐motion phantom experiments and ten fetal MR studies (17 + 4‐34 + 3 gestational weeks) at 3T. The localization network was additionally tested retrospectively on 29 low‐field (0.55T) datasets.ResultsOur method achieved real‐time fetal head tracking and prospective correction of the acquisition geometry. Localization performance achieved Dice scores of 84.4% and 82.3%, respectively for both the unseen 1.5T/3T and 0.55T fetal data, with values higher for cephalic fetuses and increasing with gestational age.ConclusionsOur technique was able to follow the fetal brain even for fetuses under 18 weeks GA in real‐time at 3T and was successfully applied “offline” to new cohorts on 0.55T. Next, it will be deployed to other modalities such as fetal diffusion MRI and to cohorts of pregnant participants diagnosed with pregnancy complications, for example, pre‐eclampsia and congenital heart disease.
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