Coherent feed-forward loops exist extensively in realistic biological regulatory systems, and are common signaling motifs. Here, we study the characteristics and the propagation mechanism of the output noise in a coherent feed-forward transcriptional regulatory loop that can be divided into a main road and branch. Using the linear noise approximation, we derive analytical formulae for the total noise of the full loop, the noise of the branch, and the noise of the main road, which are verified by the Gillespie algorithm. Importantly, we find that (i) compared with the branch motif or the main road motif, the full motif can effectively attenuate the output noise level; (ii) there is a transition point of system state such that the noise of the main road is dominated when the underlying system is below this point, whereas the noise of the branch is dominated when the system is beyond the point. The entire analysis reveals the mechanism of how the noise is generated and propagated in a simple yet representative signaling module.
Neurons can detect weak target signals from complex background signals through stochastic resonance (SR) and vibrational resonance (VR) mechanisms. However, random phase variation of rapidly fluctuating background signals is generally ignored in classical VR or SR studies. Here, the rapidly fluctuating background signals are modeled by bounded noise with random rapidly fluctuating phase derived from Wiener process. Then, the influences of bounded noise on the weak signal detection are discussed in the FitzHugh-Nagumo (FHN) neuron. Numerical results reveal the occurrence of bounded noise-induced single-and biresonance as well as a transition between them. Randomness in phase can enhance the adaptability of neurons, but at the cost of signal detection performance so that neurons can work in more complex environments with a wider frequency range. More interestingly, bounded noise with appropriate parameters can not only optimize information transmission but also simultaneously reduce energy consumption. Finally, the potential mechanism of bounded noise is explained.
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