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These authors have contributed equally to this work.The Southern Ocean is currently subject to intense investigations, mainly related to its importance for global biogeochemical cycles and its alarming rate of warming in response to climate change. Microbes play an essential role in the functioning of this ecosystem and are the main drivers of the biogeochemical cycling of elements. Yet, the diversity and abundance of microorganisms in this system remain poorly studied, in particular with regards to changes along environmental gradients. Here, we used amplicon sequencing of 16S rRNA gene tags using primers covering both Bacteria and Archaea to assess the composition and diversity of the microbial communities from four sampling depths (surface, the maximum and minimum of the oxygen concentration, and near the seafloor) at 10 oceanographic stations located in Bransfield Strait [northwest of the Antarctic Peninsula (AP)] and near the sea ice edge (north of the AP). Samples collected near the seafloor and at the oxygen minimum exhibited a higher diversity than those from the surface and oxygen maximum for both bacterial and archaeal communities. The main taxonomic groups identified below 100 m were Thaumarchaeota, Euryarchaeota and Proteobacteria (Gamma-, Delta-, Beta-, and Alphaproteobacteria), whereas in the mixed layer above 100 m Bacteroidetes and Proteobacteria (mainly Alpha-and Gammaproteobacteria) were found to be dominant. A combination of environmental factors seems to influence the microbial community composition. Our results help to understand how the dynamic seascape of the Southern Ocean shapes the microbial community composition and set a baseline for upcoming studies to evaluate the response of this ecosystem to future changes.

We describe the phytoplankton community and biomass during a summer coccolithophorid bloom sampled over the Patagonian shelf (48.58S-50.58S). Those phytoplankton species can contribute to the flux of calcium carbonate out of surface waters. Results from both microscope and high-performance liquid chromatography (HPLC) analysis are shown to complement information on the phytoplankton community. From CHEMTAX analysis of HPLC data, the most important organisms and groups identified were the coccolithophorid Emiliania huxleyi, the haptophyte Phaeocystis antarctica, dinoflagellates, diatoms, cryptophytes, prasinophytes and cyanobacteria. Phytoplankton microscope counts were converted into phytoplankton group-specific biovolume estimates. Although some microscope-identified taxa could not be determined by CHEMTAX, e.g. the autotrophic ciliate Myrionecta rubra, cluster analyses from both techniques showed similar results for the main groups. Both Emiliania huxleyi cell concentration and biomass, and the pigment 19 ′ -hexanoyloxyfucoxanthin were the most important biological features during the sampling period. At surface, nitrate was moderately high (0.2 -4.2 mM) in coccolithophorid-dominated samples, whereas phosphate (,0.33 mM) and silicate (,1.35 mM) concentrations were low. Among the environmental factors low Si:N ratios were mainly associated with the dominance of E. huxleyi. Competition and probably differential grazing could also promote a coccolithophorid outgrowth over other photoautotrophs during the summer season in the Patagonian shelf.

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