No abstract
Problem statement: Finding an accurate RNA structural alignment from primary sequence due to it is time consuming and computationally NP-hard problem is a major bioinformatics challenge. According to our investigation majority of current researches were concerned on achieving faster execution time, improving space complexity and better cache management. Recently one research introduced cache-efficient Chip Multiprocessor (CMP) algorithms with good speed-up to exploit parallelism in detection the critical path length. Our contribution in this article was a comprehensive survey of methods for solving RNA secondary structure prediction with Pseudoknots (PK) and sequence alignment in bioinformatics. The aim was to highlight the challenges related issues which would provide sufficient information to assist the new coming researchers in this field as well as a good reference guide for bioinformatics professionals. Approach: We computed various algorithms that predicted an RNA molecules secondary structure from primary sequence, without pseudoknots from one side and pseudoknotted RNA secondary structure in the other side. Furthermore, we also reviewed and compared in two tables the methods that developed for RNA structural predictions. Results: Our findings of this survey confirmed that Dynamic Programming (DP) method via CMP algorithms can be used to predict the RNA secondary structure with simple PK and it gives good results. Conclusion: The methods for predicting RNA's structural are coming in two groups: Firstly, pseudoknotted RNA structural problem is computationally complex and secondly, common methods significantly gave not accurate enough results for predicting pseudoknotted RNA
Automated deep learning is promising in artificial intelligence (AI). However, a few applications of automated deep learning networks have been made in the clinical medical fields. Therefore, we studied the application of an open-source automated deep learning framework, Autokeras, for detecting smear blood images infected with malaria parasites. Autokeras is able to identify the optimal neural network to perform the classification task. Hence, the robustness of the adopted model is due to it not needing any prior knowledge from deep learning. In contrast, the traditional deep neural network methods still require more construction to identify the best convolutional neural network (CNN). The dataset used in this study consisted of 27,558 blood smear images. A comparative process proved the superiority of our proposed approach over other traditional neural networks. The evaluation results of our proposed model achieved high efficiency with impressive accuracy, reaching 95.6% when compared with previous competitive models.
scite is a Brooklyn-based organization that helps researchers better discover and understand research articles through Smart Citations–citations that display the context of the citation and describe whether the article provides supporting or contrasting evidence. scite is used by students and researchers from around the world and is funded in part by the National Science Foundation and the National Institute on Drug Abuse of the National Institutes of Health.
hi@scite.ai
10624 S. Eastern Ave., Ste. A-614
Henderson, NV 89052, USA
Copyright © 2024 scite LLC. All rights reserved.
Made with 💙 for researchers
Part of the Research Solutions Family.