Temporary rivers are characterized by shifting habitats between flowing, isolated pools, and dry phases. Despite the fact that temporary rivers are currently receiving increasing attention by researchers and managers, the isolated pools phase has been largely disregarded. However, isolated pools in temporary rivers are transitional habitats of major ecological relevance as they support aquatic ecosystems during no-flow periods, and can act as refugees for maintaining local and regional freshwater biodiversity. Pool characteristics such as surface water permanence and size, presence of predators, local physicochemical conditions, time since disconnection from the river flow, or distance to other freshwater habitats challenge a comprehensive understanding of the ecology of these habitats, and challenge ecological quality assessments and conservation practices in temporary rivers. In this paper, we aim at providing a characterization of isolated pools from a hydrological, geomorphological, physicochemical, biogeochemical, and biological point of view as a framework to better conceptualize, conserve, and manage these habitats.

1. Ecosystems experience natural disturbances and anthropogenic impacts that affect biological communities and ecological processes. When natural disturbance modifies anthropogenic impacts, current widely used bioassessment metrics can prevent accurate assessment of biological quality.2. Our aim was to assess the ability of biomonitoring metrics to detect anthropogenic impacts at both perennial and intermittent sites, and in the latter including both flowing and disconnected pool aquatic phases. Specifically, aquatic macroinvertebrates from 20 rivers were sampled along gradients of natural flow intermittence (natural disturbance) and anthropogenic impacts to investigate their combined effects on widely used river biomonitoring metrics (i.e. taxonomic richness and standard biological indices) and novel functional metrics, including functional redundancy (i.e. the number of taxa contributing similarly to an ecosystem function, here a trophic function) and response diversity (i.e. how functionally similar taxa respond to natural disturbance and anthropogenic impacts). Only the widely used IBMWP index (Iberian Biological Monitoring Working Party)was able to detect anthropogenic impacts in intermittent rivers when used during flowing phases. Several functional metrics also detected anthropogenic impacts regardless of flow intermittence. Besides, functional redundancy of the entire community remained effective even in disconnected pools. Synthesis and applications.Our results show that natural flow intermittence can confound river bioassessment, and that a set of new functional metrics could be used as effective alternatives to standard metrics in naturally disturbed intermittent rivers. Our findings suggest that water managers should incorporate alternative functional metrics in the routine biomonitoring of naturally disturbed rivers. K E Y W O R D Sbioassessment, functional diversity, intermittent rivers, intermittent streams, macroinvertebrates, multiple stressors, natural stress, temporary rivers 284 | Journal of Applied Ecology SORIA et Al.

Aim To analyse temporal metacommunity dynamics in river networks in relation to hydrological conditions and dispersal. Location Fifteen river reaches from the Llobregat, Besòs and Foix catchments in the North‐Eastern Iberian Peninsula. Taxon Aquatic macroinvertebrates belonging to 99 different families. Methods We sampled aquatic macroinvertebrate communities during spring in 20 consecutive years. We built two environmental distances (one related with water chemistry and another one with river flow regime) and two spatial distances (network distance and topographic distance). Then we used Mantel tests (accounting for spatial autocorrelation) to relate macroinvertebrate dissimilarity with environmental and spatial distances. Additionally, we determined the dry and wet years using the Standardized Precipitation Index (SPI) and we classified macroinvertebrate families based on their ability to fly and to drift. Finally, we ran a linear regression model including the correlation value (r) of each Mantel test as response variable and distance type (environmental or spatial), SPI, dispersal mode, their pairwise interactions and a three‐way interaction as predictor variables. Results Metacommunity organization varied over time and it was significantly affected by precipitation, which can be related to river network connectivity. The environmental filters, mainly the flow regime, were generally more important than the spatial filters in explaining community dissimilarity over the study period. However, this depended on the dispersal abilities of the organisms. Network fragmentation due to flow intermittence during the dry years significantly reduced the dispersal capacity of strong aerial dispersers, leading to spatially structured metacommunities. For strong drift dispersers, community dissimilarity patterns were generally best explained by environmental filters regardless of SPI. Main conclusions A significant temporal variation in metacommunity organization can be expected in highly dynamic systems (e.g. Mediterranean rivers) and it might depend on the dispersal modes and abilities of the organisms, since they determine the response to changes in environmental and landscape filters.

Abiotic stress shapes how communities assemble and support ecological functions. However, it remains unclear whether artificially increasing or decreasing stress levels would lead to communities assembling predictably along a single axis of variation or along multiple context-dependent trajectories of change. In response to stress intensity alterations, we hypothesize that a single trajectory of change occurs when trait-based assembly prevails, while multiple trajectories of change arise when dispersal-related processes modify colonization and trait-filtering dynamics. Here, we tested these hypotheses using aquatic macroinvertebrates from rivers exposed to gradients of natural salinity and artificially diluted or salinized ion contents. Our results showed that trait-filtering was important in driving community assembly in natural and diluted rivers, while dispersal-related processes seemed to play a relevant role in response to salinization. Salinized rivers showed novel communities with different trait composition, while natural and diluted communities exhibited similar taxonomic and trait compositional patterns along the conductivity gradient. Our findings suggest that the artificial modification of chemical stressors can result in different biological communities, depending on the direction of the change (salinization or dilution), with trait-filtering, and organism dispersal and colonization dynamics having differential roles in community assembly. The approach presented here provides both empirical and conceptual insights that can help in anticipating the ecological effects of global change, especially for those stressors with both natural and anthropogenic origins. This article is part of the theme issue ‘Salt in freshwaters: causes, ecological consequences and future prospects’.

The biomonitoring methods implemented by water authorities are mostly developed for perennial rivers, and do not apply to temporary rivers (TRs). We propose a new classification for TRs to better assess their ecological status. It arises from the LIFE+ TRivers project, which was conducted in the Catalan and the Júcar Mediterranean river basin districts (RBD). The European Water Framework Directive (WFD) provided two systems to set river types (systems A or B from Annex II), which have been officially used by water authorities across Europe to set “national river types” (NRTs). However, essential hydrological variables for TRs are largely omitted. NRTs established according to the WFD were compared with TR categories obtained by using a rainfall-runoff model, “natural flows prescribed regimes” (NFPRs), and with “aquatic phases regimes” (APRs) calculated by using TREHS software. The biological quality indices currently used in Spain, based on macroinvertebrates and diatoms (IBMWP, IMMI-T, and IPS), were compared with a “general degradation” gradient in order to analyze the two TR river classification procedures (NFPR and APR). The results showed that NRTs did not properly classify TRs, and that the APR classification identified ecologically meaningful categories, especially those related to stagnant phases. Four “management temporary river categories” based on APRs are proposed to be used for water managers to properly assess the ecological status of TRs.