The structure, the surface bonding, and the energetics of alkanethiols adsorbed on Cu(111), Ag(111), and Au(111) surfaces were studied under low and high coverages. The potential energy surfaces (PES) for the thiol/metal interaction were investigated in the absence and presence of externally applied electric fields in order to simulate the effect of the electrode potential on the surface bonding. The electric field affects the corrugation of the PES which decreases for negative fields and increases for positive fields. In the structural investigation, we considered the relaxation of the adsorbate and the surface. The highest relaxation in a direction perpendicular to the surface was observed for gold atoms, whereas silver atoms presented the highest relaxation in a plane parallel to the surface. The surface relaxation is more important in the low coverage limit. The surface bonding was investigated by means of the total and projected density of states analysis. The highest ionic character was observed on the copper surface whereas the highest covalent character occurs on gold. This leads to a strong dependence of the PES with the tilt angle of the adsorbate on Au(111) whereas this dependence is less pronounced on the other metals. Thus, the adsorbate-relaxation and the metal-relaxation contributions to the binding energy are more important on gold. The adsorption of thiols on gold was investigated on the 111 surface as well as on a surface with gold adatoms in order to elucidate the effect of thiols on the surface diffusion of gold. The CH(3)CH(2)S radical adsorbs ontop of the gold adatom. The diffusional barrier of the CH(3)CH(2)SAu species is lower than that for a bare gold adatom and is also lower than that for the bare thiol radical. The adsorption of the molecular species CH(3)SH and CH(3)CH(2)SH was also investigated on Au(111). They adsorb via the sulfur atom ontop of a gold atom. On the other hand, the adsorption of the alkanethiol radicals on the perfect 111 surfaces occurs on the face centered cubic (fcc)-bridge site in the low coverage limit for all metals and shifts toward the fcc site at high coverage on copper and silver.

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The local structure of the sulfur atom of methanethiolate and ethanethiolate on the Cu(111) and Cu(100) surfaces was investigated from first principles employing the periodic supercell approach in the framework of density functional theory. On the 111 surface, we investigated the (square root 3 x square root 3)R30 degrees and (2 x 2) structures, whereas on the 100 surface, we investigated the p(2 x 2) and c(2 x 2) structures. The landscape of the potential energy surface on each metal surface presents distinctive features that explain the local adsorption structure of thiolates found experimentally. On the Cu(111) surface, the energy difference between the hollow and bridge sites is only 3 kcal/mol, and consequently, adsorption sites ranging from the hollow to the bridge site were observed for increasing surface coverages. On the Cu(100) surface, there is a large energy difference of 12 kcal/mol between the hollow and bridge sites, and therefore, only the 4-fold coordination was observed. The high stabilization of thiolates on the hollow site of Cu(100) may be the driving force for the pseudosquare reconstruction observed experimentally on Cu(111). Density of states analysis and density difference plots were employed to characterize the bonding on different surface sites. Upon interaction with the metal d bands, the pi* orbital of methanethiolate splits into several peaks. The two most prominent peaks are located on either edge of the metal d band. They correspond to bonding and antibonding S-Cu interactions. In the case of ethanethiolate, all the back-bonds are affected by the surface bonding, leading to alternating regions of depletion and accumulation of charge in the successive bonds.

The structure and stability of mixed self-assembled monolayers (SAMs) of 3-mercaptopropionic acid (MPA) and 11-mercaptoundecanoic acid (MUA) prepared by immersion in ethanolic solutions were studied by cyclic voltammetry, electrochemical impedance spectroscopy, ellipsometry, and STM as a function of the thiol composition of the forming solution. The presence of a single reductive desorption peak in the voltammograms of the mixed SAMs and the lack of phase segregation observed by STM support the formation of homogeneous SAMs despite the large chain length difference between MPA and MUA. To explain the driving force leading to the formation of a homogeneous mixture, intermolecular interactions within the SAM were investigated using density functional theory. The carboxyl groups of adjacent MPA and MUA molecules in a compact monolayer can form a stable head to head cyclic dimer with a hydrogen bond strength of 16.2 kcal/mol. The flexibility of the alkyl chain of MUA allows the carboxyl groups of adjacent MPA and MUA molecules to be located on the same plane. However, the carboxyls of adjacent MPA-MPA and MUA-MUA pairs form much weaker hydrogen bonds because steric constraints avoid the formation of the stable cyclic dimer. Therefore, the prevalence of MPA-MUA interactions over MPA-MPA and MUA-MUA interactions explains the homogeneous mixing of MPA and MUA. The potential chemical switchability properties of mixed monolayers of mercaptoalcanoic acids of different chain lengths as a function of the solution pH are discussed.