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The Mesozoic–Cenozoic tectonic movement largely controls the northwest region of the Junggar Basin (NWJB), which is a significant area for the exploration of petroleum and sandstone‐type uranium deposits in China. This work collected six samples from this sedimentary basin and surrounding mountains to conduct apatite fission track (AFT) dating, and utilized the dating results for thermochronological modeling to reconstruct the uplift history of the NWJB and its response to hydrocarbon migration and uranium mineralization. The results indicate that a single continuous uplift event has occurred since the Early Cretaceous, showing spatiotemporal variation in the uplift and exhumation patterns throughout the NWJB. Uplift and exhumation initiated in the northwest and then proceeded to the southeast, suggesting that the fault system induced a post spread‐thrust nappe into the basin during the Late Yanshanian. Modeling results indicate that the NWJB mountains have undergone three distinct stages of rapid cooling: Early Cretaceous (ca. 140–115 Ma), Late Cretaceous (ca. 80–60 Ma), and Miocene–present (since ca. 20 Ma). These three stages regionally correspond to the Lhasa‐Eurasian collision during the Late Jurassic–Early Cretaceous (ca. 140–125 Ma), the Lhasa‐Gandise collision during the Late Cretaceous (ca. 80–70 Ma), and a remote response to the India‐Asian collision since ca. 55 Ma, respectively. These tectonic events also resulted in several regional unconformities between the J3/K1, K2/E, and E/N, and three large‐scale hydrocarbon injection events in the Piedmont Thrust Belt (PTB). Particularly, the hydrocarbon charge event during the Early Cretaceous resulted in the initial inundation and protection of paleo‐uranium ore bodies that were formed during the Middle–Late Jurassic. The uplift and denudation of the PTB was extremely slow from 40 Ma onward due to a slight influence from the Himalayan orogeny. However, the uplift of the PTB was faster after the Miocene, which led to re‐uplift and exposure at the surface during the Quaternary, resulting in its oxidation and the formation of small uranium ore bodies.

The Kamust sandstone‐hosted uranium deposit was recently discovered within the Middle Jurassic Toutunhe Formation of the eastern Junggar Basin. In this study, polarizing microscope and scanning electron microscope observation, electron microprobe analysis, and laser ablation inductively coupled plasma mass spectrometry measurement were carried out to define the petrology, mineralogy, and geochemistry of these sandstone‐hosted uranium ores. In addition, sulphur isotope signatures for the associated ore‐stage pyrites and the ore‐forming age were determined. The results show that the mineralized sandstones, which exhibit excellent reducibility with abundant organic matter and pyrites, are characterized by the secondary accumulation of uranium and are slightly enriched in rare earth elements (REE) and light REE (LREE). The uranium deposits are mainly composed of a large amount of uraninite, followed by some coffinites and uranium‐bearing titanium minerals and very few sorptive uranium‐bearing materials. Uranium minerals primarily exist within the interior and edge of clastic particles in colloidal, dispersed, and vein form, and some are closely interweaved with the colloidal and framboidal pyrites and carbonaceous detritus. Both uraninite and coffinite are strongly enriched in REE and LREE, as determined by in situ trace element measurements. Moreover, the δ34S values of the associated ore‐stage pyrites mostly range from −41.66 to −19.33‰, indicating biological origin, and light 32S demonstrates the relatively low‐temperature and open‐system mineralization processes related to the microbial anaerobic action on the organic matter. One of the δ34S values (6.88‰) is possibly caused by Rayleigh isotope fractionation due to the utilization of residual heavy 34S in the relatively later closed‐like mineralization system. The ore‐reforming ages of 27 ± 3.2 Ma, 22.4 ± 3.9 Ma, and 21.3 ± 2.3 Ma were obtained by U–Pb isotopic dating combined with U–Ra balance correction, corresponding to the rapid uplift event caused by the remote effect of the collision between the Indian and Eurasian plates at the end of the Palaeogene. In conjunction with the tectonic–sedimentary evolution of the study region, a four‐stage ore‐forming model for the Middle Jurassic Toutunhe Formation is preliminarily constructed: ① Development of ore‐bearing strata, ② initiation of the mineralization stage from the Late Jurassic to the Early Cretaceous, ③ deep burial by lacustrine and flood mudstone from the Cretaceous to the Palaeogene, and ④ the superimposed ore‐forming stage during the Neogene. These research results provide significant benefits for further uranium prospecting and in situ leach process mining in this basin.