BackgroundDue to recent advances in data storage and sharing for further data processing in predictive toxicology, there is an increasing need for flexible data representations, secure and consistent data curation and automated data quality checking. Toxicity prediction involves multidisciplinary data. There are hundreds of collections of chemical, biological and toxicological data that are widely dispersed, mostly in the open literature, professional research bodies and commercial companies. In order to better manage and make full use of such large amount of toxicity data, there is a trend to develop functionalities aiming towards data governance in predictive toxicology to formalise a set of processes to guarantee high data quality and better data management. In this paper, data quality mainly refers in a data storage sense (e.g. accuracy, completeness and integrity) and not in a toxicological sense (e.g. the quality of experimental results).ResultsThis paper reviews seven widely used predictive toxicology data sources and applications, with a particular focus on their data governance aspects, including: data accuracy, data completeness, data integrity, metadata and its management, data availability and data authorisation. This review reveals the current problems (e.g. lack of systematic and standard measures of data quality) and desirable needs (e.g. better management and further use of captured metadata and the development of flexible multi-level user access authorisation schemas) of predictive toxicology data sources development. The analytical results will help to address a significant gap in toxicology data quality assessment and lead to the development of novel frameworks for predictive toxicology data and model governance.ConclusionsWhile the discussed public data sources are well developed, there nevertheless remain some gaps in the development of a data governance framework to support predictive toxicology. In this paper, data governance is identified as the new challenge in predictive toxicology, and a good use of it may provide a promising framework for developing high quality and easy accessible toxicity data repositories. This paper also identifies important research directions that require further investigation in this area.
With the increased use of online social networking sites, data retrieval from social networking profiles is becoming a major tool for business. What makes social networking profile data different is its semi-structured format. The structure and the presentation of profile data change all the time. In social networking there is a lack of research into automated data retrieval from semi-structured web pages. Our approach is based on automated retrieval of the profile's attributes and list of top friends from MySpace by examining and extracting the relevant tokens in the parsed HTML code. The tokens were placed into a repository and Breadth First Search algorithm was used. The approach was implemented and tested with a profile which resulted in over 800 top friend profiles and attributes being extracted. This implementation process highlighted that MySpace profile structures vary depending on profile type and the way in which the user has customised the profile.
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