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Background The root system plays a major role in plant growth and development and root system architecture is reported to be the main trait related to plant adaptation to drought. However, phenotyping root systems in situ is not suited to high-throughput methods, leading to the development of non-destructive methods for evaluations in more or less controlled root environments. This study used a root phenotyping platform with a panel of 20 japonica rice accessions in order to: (i) assess their genetic diversity for a set of structural and morphological root traits and classify the different types; (ii) analyze the plastic response of their root system to a water deficit at reproductive phase and (iii) explore the ability of the platform for high-throughput phenotyping of root structure and morphology. Results High variability for the studied root traits was found in the reduced set of accessions. Using eight selected traits under irrigated conditions, five root clusters were found that differed in root thickness, branching index and the pattern of fine and thick root distribution along the profile. When water deficit occurred at reproductive phase, some accessions significantly reduced root growth compared to the irrigated treatment, while others stimulated it. It was found that root cluster, as defined under irrigated conditions, could not predict the plastic response of roots under drought. Conclusions This study revealed the possibility of reconstructing the structure of root systems from scanned images. It was thus possible to significantly class root systems according to simple structural traits, opening up the way for using such a platform for medium to high-throughput phenotyping. The study also highlighted the uncoupling between root structures under non-limiting water conditions and their response to drought.

Rice crop is known as particularly sensitive to water deficit, especially during the reproductive phase when growth of vegetative organs and formation of spikelets are simultaneous. Many works have focused on the response of rice plants to water deficits varying in timing, duration and intensity. Oppositely, the impact of the environmental conditions on the response to a given water deficit remains largely unknown. In order to test it, two experiments under contrasted conditions of temperature, radiation and VPD were conducted on six genotypes in greenhouse in Brazil (S) and in growth chamber in France (GC). The plants were submitted to the same mild water deficit at the reproductive phase, by adjusting FTSW at 0.4. Under irrigation, plant growth rate was reduced and crop duration extended in GC in relation to S: ultimately, this trade-off resulted in similar plant height and biomass in both environments. Under water deficit and in both environments, elongation rate decreased and was associated with an increase in soluble sugars in stem and flag leaf, while starch was reduced in S and negligible in GC because of the low radiation. This common biochemical response displayed a large gradient of values across environments and genotypes, but differentially impacted the branch and spikelet formation on the developing panicle: in carbon limiting conditions (GC), the increase in soluble sugars was associated with the reduction in branch and spikelet number, and conversely in S. At the morphological level, the maintenance of spikelet number on the panicle was correlated with the maintenance of flag leaf width in all genotypes and conditions, that was discussed according to the maintenance of the apical meristem size. Genotypes were discriminated and the study underlined the global tolerance of Cirad 409 and sensitivity of IAC 25.