Knowledge of the migratory habits of juvenile Pacific salmon Oncorhynchus spp. is required to test the hypothesis that ocean food resources are a limiting factor in their production. Using DNA stock identification techniques, we reconstructed the regional and seasonal changes in the stock composition of juvenile sockeye salmon O. nerka (n ¼ 4,062) collected from coastal Washington to the Alaska Peninsula in coastal trawl surveys from May to February 1996-2007. Individuals were allocated to 14 regional populations. The majority were allocated to stocks from the Fraser River system (42%), while west coast Vancouver Island stocks accounted for 15% of the total catch; Nass and Skeena River sockeye salmon constituted 14% and Rivers Inlet 6% of the total. The remainder of the stocks identified individually contributed less than 5% of the sockeye salmon analyzed. These proportions generally reflected the abundance of those populations. In spring and summer, the majority of fish were caught in close proximity to their rivers of origin, lending further support to the allocations. By fall, sockeye salmon were caught as far north and west as the Alaska Peninsula, the majority being caught from central British Columbia to Southeast Alaska. Juvenile sockeye salmon generally disappeared from the coast by winter, suggesting dispersion into the Gulf of Alaska. Within each region, the proportional stock composition changed as the seasons progressed, with northward (and in some cases, rapid) migration along the coast. We also demonstrated stock-specific differences in migration patterns. For each stock identified, body size and energy density were higher at northern latitudes, suggesting that there is an environmental or food web influence on growth or that faster growing fish initiated their northward migration earlier.

The effects of ocean conditions on highly migratory species such as salmon are difficult to assess owing to the diversity of environments they encounter during their marine life. In this study, we reconstructed the initial ocean migration routes of juvenile Chinook salmon Oncorhynchus tshawytscha originating from Oregon to Southeast Alaska using coded wire tag recovery data from Canadian Department of Fisheries and Oceans and National Marine Fisheries Service research surveys conducted between 1995 and 2006. Over this 12-year period, 1,862 coded-wire-tagged juvenile Chinook salmon were recovered along the coasts of Oregon, Washington, British Columbia, and Alaska from March to November. Except for those from the Columbia River, most juvenile Chinook salmon remained within 100-200 km of their natal rivers until their second year at sea, irrespective of their freshwater history and adult run timing. Northward migration of most coastal stocks was initiated during their second or possibly third year at sea, whereas the Strait of Georgia and Puget Sound stocks primarily migrated onto the continental shelf after their first year at sea. In contrast, Columbia River Chinook salmon generally undertook a rapid northward migration that varied among life histories and stocks. Columbia River spring Chinook salmon were recovered as far north as Prince William Sound, Alaska, during their first summer at sea, whereas very few Columbia River fall Chinook salmon were recovered north of Vancouver Island. In addition to northern migrants, a fraction of the Columbia River spring and fall Chinook salmon actively migrated south of the Columbia River. The stock-specific initial ocean migration routes described in this study will aid in the identification of the appropriate spatial and temporal scales for assessing the processes regulating Chinook salmon recruitment in the marine environment.

The ocean feeding grounds of juvenile Pacific salmon Oncorhynchus spp. range over several thousand kilometers in which ocean conditions, prey quality and abundance, and predator assemblages vary greatly. Therefore, the fate of individual stocks may depend on where they migrate and how much time they spend in different regions. Juvenile (n = 6,266) and immature (n = 659) Chinook salmon Oncorhynchus tshawytscha were collected from coastal Washington to Southeast Alaska in coastal trawl surveys from February to November 1998–2008, which allowed us to reconstruct changes in stock composition for seasons and regions by means of DNA stock identification techniques. Individuals were allocated to 12 regional stocks. The genetic stock assignments were directly validated by showing that 96% of the 339 known‐origin, coded‐wire‐tagged fish were accurately allocated to their region of origin. Overall, the analyses performed in this study support the main findings of previous work based on tagging. However, given that the sample sizes for all stocks were larger and additional stocks were analyzed, we can extend those results; coastal residency of local stocks in their first year at sea with differences between smolt classes for southern stocks. Notably, yearling Chinook salmon moved quickly into waters north of the west coast of Vancouver Island, including Southeast Alaska. Furthermore, subyearling salmon were found over shallower bottom depths than yearling fish. Summer catches in all regions were dominated by Columbia River yearling fish, which suggests a rapid northward migration. In contrast, very few Columbia River subyearling fish were recovered north of Vancouver Island. Columbia River fish were a minor component of the catches in fall and winter, as fish originating from other southern stocks dominated catches off the west coast of Vancouver Island while northern British Columbia and Southeast Alaska stocks dominated northern regions during these time periods. In addition, we found no effect of hatchery origin on the distribution of fish.

Several evolutionarily significant units (ESUs) of Columbia River asin Chinook Salmon Oncorhynchus tshawytscha and Coho Salmon O. kisutch are listed as threatened or endangered under the U.S. Endangered Species Act. Yet little is known about the spatial and temporal distributions of these ESUs immediately following ocean entry, when year‐class success may be determined. We documented differences in dispersal patterns during the early ocean period among groups defined by ESU, adult run timing, and smolt age. Between 1995 and 2006, 1,896 coded‐wire‐tagged juvenile fish from the Columbia River basin were recovered during 6,142 research trawl events along the West Coast of North America. Three distinct ocean dispersal patterns were observed: (1) age‐1 (yearling) mid and upper Columbia River spring‐run and Snake River spring–summer‐run Chinook Salmon migrated rapidly northward and by late summer were not found south of Vancouver Island; (2) age‐0 (subyearling) lower Columbia River fall, upper Columbia River summer, upper Columbia River fall, and Snake River fall Chinook Salmon dispersed slowly, remaining mainly south of Vancouver Island through autumn; and (3) age‐1 lower Columbia River spring, upper Columbia River summer, and upper Willamette River spring Chinook Salmon and Coho Salmon were widespread along the coast from summer through fall, indicating a diversity of dispersal rates. Generally, the ocean dispersal of age‐1 fish was faster and more extensive than that of age‐0 fish, with some age‐1 fish migrating as fast as 10–40 km/d (0.5–3.0 body lengths/s). Within groups, interannual variation in dispersal was moderate. Identification of the distinct temporal and spatial ocean distribution patterns of juvenile salmon from Columbia River basin ESUs is important in order to evaluate the potential influence of changing ocean conditions on the survival and long term sustainability of these fish populations.