Long-term population viability of Fraser River sockeye salmon (Oncorhynchus nerka) is threatened by unusually high levels of mortality as they swim to their spawning areas before they spawn. Functional genomic studies on biopsied gill tissue from tagged wild adults that were tracked through ocean and river environments revealed physiological profiles predictive of successful migration and spawning. We identified a common genomic profile that was correlated with survival in each study. In ocean-tagged fish, a mortality-related genomic signature was associated with a 13.5-fold greater chance of dying en route. In river-tagged fish, the same genomic signature was associated with a 50% increase in mortality before reaching the spawning grounds in one of three stocks tested. At the spawning grounds, the same signature was associated with 3.7-fold greater odds of dying without spawning. Functional analysis raises the possibility that the mortality-related signature reflects a viral infection.

Summary1. Effective management of fish and wildlife populations benefits from an understanding of the effects of stressors on individual physiology. While physiological knowledge can provide a mechanistic understanding of organismal responses, its applied utility is limited because it cannot easily be used by stakeholders. 2. Reflex action mortality predictors (RAMP) is a method that involves checking for the presence or absence of natural animal reflexes to generate a condition (RAMP) score in response to stressors and to predict fate. The method has previously been validated with fishes in artificial laboratoryand field-based holding studies as a responsive measure of fisheries capture stress and a predictor of delayed mortality, but has not been evaluated in the wild. 3. We used radio telemetry to monitor migration success of 50 endangered coho salmon Oncorhynchus kisutch following incidental capture in an aboriginal beach seine fishery in the lower Fraser River (Canada). RAMP was used to measure the condition of fish at release and to predict migration success following capture. Biopsy of an additional 43 coho profiled physiological condition at time of release. 4. Individuals with greater reflex impairment (higher RAMP scores) at release experienced significantly higher rates of migration failure. RAMP scores were also significantly correlated with fishery handling time. Plasma variables showed that captured coho had experienced physiological stress characteristic of exhaustive exercise and hypoxia, with significantly elevated cortisol and lactate values for fish entangled longer in fishing gear. 5. Synthesis and applications. This is the first validation of RAMP in a wild setting. Based on our findings, fishers could use the method and make adjustments in fishing behaviour in real-time to improve fish condition and reduce the mortality of bycatch, and conservation practitioners could monitor animal condition and identify problems that deserve management attention. RAMP is an easy, rapid and inexpensive approach to predicting mortality and measuring vitality and performed better than traditional physiological tools that cannot easily be used by stakeholders.

Mean summer water temperatures in the Fraser River (British Columbia, Canada) have increased by $1.5 1C since the 1950s. In recent years, record high river temperatures during spawning migrations of Fraser River sockeye salmon (Oncorhynchus nerka) have been associated with high mortality events, raising concerns about long-term viability of the numerous natal stocks faced with climate warming. In this study, the effect of freshwater thermal experience on spawning migration survival was estimated by fitting capture-recapture models to telemetry data collected for 1474 adults (captured in either the ocean or river between 2002 and 2007) from four Fraser River sockeye salmon stockaggregates (Chilko, Quesnel, Stellako-Late Stuart and Adams). Survival of Adams sockeye salmon was the most impacted by warm temperatures encountered in the lower river, followed by that of Stellako-Late Stuart and Quesnel. In contrast, survival of Chilko fish was insensitive to the encountered river temperature. In all stocks, in-river survival of ocean-captured sockeye salmon was higher than that of river-captured fish and, generally, the difference was more pronounced under warm temperatures. The survival-temperature relationships for ocean-captured fish were used to predict historic and future (2010-2099) survival under simulated lower river thermal experiences for the Quesnel, Stellako-Late Stuart and Adams stocks. A decrease of 9-16% in survival of all these stocks was predicted by the end of the century if the Fraser River continues to warm as expected. However, the decrease in future survival of Adams sockeye salmon would occur only if fish continue to enter the river abnormally early, towards warmer periods of the summer, as they have done since 1995. The survival estimates and predictions presented here are likely optimistic and emphasize the need to consider stock-specific responses to temperature and climate warming into fisheries management and conservation strategies.

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Reproductive-based migration is a challenging period for many animals, but particularly for Pacific salmonids, which must navigate from the high seas to freshwater natal streams. For the first time, we attempt to answer the question as to why some migratory adult Pacific salmon die en route to spawning grounds. Summer-run sockeye salmon (Oncorhynchus nerka) were used as a model, and the migration behavior of 301 fish was followed by intercepting them in the ocean about 215 km from the mouth of the Fraser River, British Columbia, Canada, and implanting a gastric radio transmitter. Before release, telemetered fish were also bio-sampled, which included drawing a blood sample, collecting a gill biopsy, and quantifying energetic status with a microwave energy meter. We tested the predictions that the fish that died prematurely would be characterized by low energy reserves, advanced reproductive development, elevated indicators of stress, and low osmoregulatory preparedness compared with fish that completed their river migration. Just over half (52.3%) of the sockeye tagged were subsequently detected in the Fraser River. Salmon that failed to enter the river had exhibited indicators of stress (e.g., elevated plasma lactate, glucose, and cortisol). Contrary to our prediction, fish that failed to enter the river tended to have higher gross somatic energy and be larger at the time of sampling in the ocean than fish that successfully entered the river. Of the fish that were detected in the river (i.e., 134 fish excluding fishery removals), 9.7% did not migrate beyond the lower reaches (approximately 250 km from ocean), and a further 14.2% reached the upper reaches but failed to reach natal sub-watersheds, whereas the remainder (76.1%) reached natal sub-watersheds. Of these, fish unsuccessful in the lower reaches tended to have a high plasma osmolality in the ocean, whereas fish failing in the upper reaches had lower levels of reproductive hormones in the ocean.

Approximately 200 km from the mouth of the Fraser River, British Columbia, Canada, adult sockeye salmon Oncorhynchus nerka, were gastrically implanted with radio transmitters without anaesthetic. Subsets of the transmitter implanted fish were also biopsied which included drawing blood from the caudal peduncle (3 ml), removal of gill tissue (0Á03 g) and quantification of energetic status using a microwave fat meter. Several experiments were used to test the hypothesis that the biopsy had a negligible effect on the subsequent survival and migratory behaviour of transmitter implanted fish. In the first experiment, no difference was found in the survival (both 100%) or tag retention (both 100%) between the two treatment groups (transmitter implanted with and without biopsy) when fish were held in pens for 24 h in the marine environment. Similarly, in other experiments where fish were released to the ocean to resume their migratory journey, no statistical differences were found in the travel times of fish in the two treatment groups, or in the proportion of fish that passed in-river telemetry checkpoints. These results indicated that the handling and biopsy methods produced similar levels of mortality and tag retention as the telemetry treatment alone and that any changes in behaviour between the two treatment groups did not adversely affect migration time. Based upon the evidence provided from the biotelemetry of >300 adult sockeye salmon, it was felt that this general type of approach could be applicable to other fish species.

Adult sockeye salmon (Oncorhynchus nerka) acquire infections with the myxosporean kidney parasite Parvicapsula minibicornis during their spawning migration in the Fraser River, British Columbia. Controlled infections with this parasite in wild sockeye salmon had no significant impact on plasma ionic status, metabolic rates, and initial maximum prolonged swimming performance (Ucrit) for fish ranked as either strongly, weakly, or noninfected by polymerase chain reaction analysis of kidney tissue. However, strongly infected fish had significantly lower second Ucrit and recovery ratio (8%) values, indicating decreased ability to recover from exercise. As the present study shows that the severity of infection is affected by time and temperature, the accumulated thermal units (ATU) of exposure in this study were compared with those experienced by naturally migrating sockeye salmon. A parallel telemetry study revealed that early-timed sockeye experienced significantly more ATU (741.4 ± 29.4 °C) than normally migrating salmon (436.0 ± 20.0 °C) prior to spawning because of a significantly longer holding period in the lake system. The present data are discussed in the context of a threshold of >450 °C ATU for severe infection that would first manifest in early-timed fish in the upper reaches of the Fraser River and certainly on the spawning grounds.

Recent studies have shown that warm temperatures reduce survival of adult migrating sockeye salmon ( Oncorhynchus nerka ), but knowledge gaps exist on where high-temperature-related mortality occurs along the migration and whether females and males are differentially impacted by river temperature. In this study, we monitored 437 radio-tagged Fraser River sockeye salmon and used capture–mark–recapture modelling approaches to investigate whether river thermal conditions differentially influence (i) spatial patterns of survival along a 413-km stretch of migration and (ii) survival of the sexes. Regardless of water temperature, survival decreased in the river section containing the most hydraulically difficult passages of the migration. However, when water temperature was warm (19 °C), survival decreased even further in the final 186 km of the migration prior to reaching the spawning grounds, particularly in females. Female and male survival differed but only when they experienced warm river temperatures. Under such conditions, the overall freshwater migration survival of males was 1.6 times higher (0.79 ± 0.09 standard error, SE) than that of females (0.50 ± 0.11 SE). As maturing female sockeye salmon maintain higher levels of plasma cortisol compared with males, we suspect that females could be immuno-compromised and thus less resistant to pathogens whose rates of development are accelerated by warm temperatures.