This paper presents our effort to assimilate FORMOSAT‐3/COSMIC (F3/C) GPS Occultation Experiment (GOX) observations into the National Center for Atmospheric Research (NCAR) Thermosphere Ionosphere Electrodynamics General Circulation Model (TIE‐GCM) by means of ensemble Kalman filtering (EnKF). The F3/C electron density profiles (EDPs) uniformly distributed around the globe which provide an excellent opportunity to monitor the ionospheric electron density structure. The NCAR TIE‐GCM simulates the Earth's thermosphere and ionosphere by using self‐consistent solutions for the coupled nonlinear equations of hydrodynamics, neutral and ion chemistry, and electrodynamics. The F3/C EDP are combined with the TIE‐GCM simulations by EnKF algorithms implemented in the NCAR Data Assimilation Research Testbed (DART) open‐source community facility to compute the expected value of electron density, which is ‘the best’ estimate of the current ionospheric state. Assimilation analyses obtained with real F3/C electron density profiles are compared with independent ground‐based observations as well as the F3/C profiles themselves. The comparison shows the improvement of the primary ionospheric parameters, such as NmF2 and hmF2. Nevertheless, some unrealistic signatures appearing in the results and high rejection rates of observations due to the applied outlier threshold and quality control are found in the assimilation experiments. This paper further discusses the limitations of the model and the impact of ensemble member creation approaches on the assimilation results, and proposes possible methods to avoid these problems for future work.

[1] Previous studies report unexpected electron density reductions, termed "plasma caves," located underneath the equatorial ionization anomaly (EIA) crests. A radio occultation (RO) observation simulation experiment has been built to evaluate possible biases introduced by the spherical symmetry assumption in the standard (Abel) RO inversion processes. The experiment simulates the electron density profiles and reconstructs the plasma structure of the EIA at low latitudes, where the horizontal gradient is most significant. The reconstruction shows that artificial plasma caves are created underneath the EIA crests along with three density enhancements in adjacent latitudes. The artifact appears mainly below 250 km altitudes and becomes pronounced when the EIAs are well developed. Above that altitude, the two EIA features in the original (truth) model, the International Reference Ionosphere (IRI-2007), and in the inversion are similar, but the inversion reconstructs less distinct EIA crests with underestimation of the electron density. A simple correction has been introduced by multiplying the ratio between the truth and inversion with actual FORMOSAT-3/COSMIC observations. This initial correction shows that the artificial plasma caves are mitigated. Results also reveal that the RO technique is not suitable to detect or rule out possible existence of the plasma caves.

This paper for the first time reports global three‐dimensional (3‐D) structures of the ionospheric midlatitude trough using electron density profiles derived from the GPS radio occultation experiment on board FORMOSAT‐3/COSMIC (F3/C) satellites during the solar minimum period, February 2008 to January 2009. Results show that the midlatitude trough extends from dusk to dawn in all four seasons and is most pronounced in the winter hemisphere. The troughs in the two hemispheres are asymmetric, where the trough in the Northern Hemisphere is more evident and stronger than that in the Southern Hemisphere during the equinoctial seasons. In general, the trough minimum position shows a high‐low‐high latitudinal variation with magnetic local time and occurs at lower latitudes under higher magnetic activity. On the other hand, the midlatitude trough structures become more complex in the Southern Hemisphere because of the nighttime plasma density enhancement of the Weddell Sea Anomaly. Our results demonstrate that the new data set of GPS radio occultation by F3/C is useful to probe the global 3‐D electron density structures of the midlatitude trough.