During the austral summer of 2014, an oceanographic cruise was conducted in the Ross Sea in the framework of the RoME (Ross Sea Mesoscale Experiment) Project. Forty-three hydrological stations were sampled within three different areas: the northern Ross Sea (RoME 1), Terra Nova Bay (RoME 2), and the southern Ross Sea (RoME 3). The ecological and photophysiological characteristics of the phytoplankton were investigated (i.e., size structure, functional groups, PSII maximum quantum efficiency, photoprotective pigments), as related to hydrographic and chemical features. The aim was to identify the mechanisms that modulate phytoplankton blooms, and consequently, the fate of organic materials produced by the blooms. The observed biomass standing stocks were very high (e.g., integrated chlorophyll-a up to 371 mg m-2 in the top 100 m). Large differences in phytoplankton community composition, relative contribution of functional groups and photosynthetic parameters were observed among the three subsystems. The diatoms (in different physiological status) were the dominant taxa in RoME 1 and RoME 3; in RoME 1, a post-bloom phase was identified, whereas in RoME 3, an active phytoplankton bloom occurred. In RoME 2, diatoms co-occurred with Phaeocystis antarctica, but were vertically segregated by the upper mixed layer, with senescent diatoms dominating in the upper layer, and P. antarctica blooming in the deeper layer. The dominance of the phytoplankton micro-fraction over the whole area and the high Chl-a suggested the prevalence of non-grazed large cells, independent of the distribution of the two functional groups. These data emphasise the occurrence of significant temporal changes in the phytoplankton biomass in the Ross Sea during austral summer. The mechanisms that drive such changes and the fate of the carbon production are probably related to the variations in the limiting factors induced by the concurrent hydrological modifications to the Ross Sea, and they remain to be fully clarified. The comparison of conditions observed during summer 2014 and those reported for previous years reveal considerably different ecological assets that might be the result of current climate change. This suggests that further changes can be expected in the future, even at larger oceanic scales.

The climatology and interannual variability of winter phytoplankton was analyzed at the Long Term Ecological Research Station MareChiara (LTER-MC, Gulf of Naples, Mediterranean Sea) using data collected from 1985 to 2006. Background winter chlorophyll values (0.2-0.5 μg chl a dm −3 ) were associated with the dominance of flagellates, dinoflagellates, and coccolithophores. Winter biomass increases (<5.47 μg chl a dm −3 ) were often recorded until 2000, generally in association with lowsalinity surface waters (37.3-37.9). These blooms were most often caused by colonial diatoms such as Chaetoceros spp., Thalassiosira spp., and Leptocylindrus danicus. In recent years, we observed more modest and sporadic winter biomass increases, mainly caused by small flagellates and small non-colonial diatoms. The resulting negative chl a trend over the time series was associated with positive surface salinity and negative nutrient trends. Physical and meteorological conditions apparently exert a strict control on winter blooms, hence significant changes in winter productivity can be foreseen under different climatic scenarios.

Many planktonic diatoms produce resting stages that survive in the sediment and allow species persistence over periods in which vegetative growth does not occur. With the aim of depicting the annual variability of diatom benthic stage production and understanding the relationships between planktonic and benthic dynamics, we quantified diatoms in surface waters and their viable resting stages in surface sediments at the long-term ecological research station MareChiara (LTER-MC) in the Gulf of Naples (Mediterranean Sea) over 15 mo. A considerable fraction of the diatom species recorded in the water column was also obtained from germination in surface sediments, showing that the formation of resting stages is a widespread life strategy in coastal areas. The most abundant taxa recorded in the plankton were several species of the genera Chaetoceros, Skeletonema, Thalassiosira, Cyclotella, Pseudo-nitzschia and Bacteriastrum. Species of the latter 2 genera were never retrieved from the sediment. Peaks of viable resting stages were generally recorded in the same period as blooms of the individual species in the plankton. Repeated germination experiments with the same sediments demonstrated that some species are more resistant than others to prolonged darkness, while different daylength conditions did not produce a clear effect on germination patterns. This first time-series analysis of a coastal seed bank demonstrates that the assemblage of viable diatoms in the sediment varies over the year, reflecting the diatom dyna mics in the water column, but also species-specific characteristics in survival capability and likely the disturbance due to biotic and abiotic factors.

The internal organization of plankton communities plays a key role in biogeochemical cycles and in the functioning of aquatic ecosystems. In this study, the structure of a marine plankton community (including both unicellular and multicellular organisms) was inferred by applying an ecological network approach to species abundances observed weekly at the long‐term ecological research station MareChiara (LTER‐MC) in the Gulf of Naples (Tyrrhenian Sea, Mediterranean Sea) in the summers of 2002–2009. Two distinct conditions, characterized by different combination of salinity and chlorophyll values, alternated at the site: one influenced by coastal waters, herein named ‘green’, and the other reflecting more offshore conditions, named ‘blue’. The green and blue ‘phases’ showed different keystone biological elements: namely, large diatoms and small‐sized flagellates, respectively. Several correlations amongst species belonging to different trophic groups were found in both phases (connectance ~0.30). In the green phase, several links between phytoplankton and mesozooplankton and within the latter were detected, suggesting matter flow from microbes up to carnivorous zooplankton. A microbial‐loop‐like sub‐web, including mixo‐ and heterotrophic dinoflagellates and ciliates, was present in the green phase, but it was relatively more important in the blue phase. The latter observation suggests a more intense cycling of matter at the microbial trophic level in the blue phase. These results show that different modes of ecological organization can emerge from relatively small changes in the composition of aquatic communities coping with environmental variability. This highlights a significant plasticity in the internal structure of plankton webs, which should be taken into account in predictions of the potential effects of climatic oscillations on aquatic ecosystems and biogeochemical cycles therein.

A first synoptic and trans-domain overview of plankton dynamics was conducted across the aquatic sites belonging to the Italian Long-Term Ecological Research Network (LTER-Italy). Based on published studies, checked and complemented with unpublished information, we investigated phytoplankton and zooplankton annual dynamics and long-term changes across domains: from the large subalpine lakes to mountain lakes and artificial lakes, from lagoons to marine coastal ecosystems. This study permitted identifying common and unique environmental drivers and ecological functional processes controlling seasonal and long-term temporal course. The most relevant patterns of plankton seasonal succession were revealed, showing that the driving factors were nutrient availability, stratification regime, and freshwater inflow. Phytoplankton and mesozooplankton displayed a wide interannual variability at most sites. Unidirectional or linear long-term trends were rarely detected but all sites were impacted across the years by at least one, but in many case several major stressor(s): nutrient inputs, meteo-climatic variability at the local and regional scale, and direct human activities at specific sites. Different climatic and anthropic forcings frequently co-occurred, whereby the responses of plankton communities were the result of this environmental complexity. Overall, the LTER investigations are providing an unparalleled framework of knowledge to evaluate changes in the aquatic pelagic systems and management options.