Fungal communities associated with roots play a key role in nutrient uptake and in mitigating the abiotic and biotic stress of their host. In this study, we characterized the roots mycobiome of wild and cultivated pearl millet [Pennisetum glaucum (L.) R. Br., synonym: Cenchrus americanus (L.) Morrone] in three agro-ecological areas of Senegal following a rainfall gradient. We hypothesized that wild pearl millet could serve as a reservoir of endophytes for cultivated pearl millet. We therefore analyzed the soil factors influencing fungal community structure and whether cultivated and wild millet shared the same fungal communities. The fungal communities associated with pearl millet were significantly structured according to sites and plant type (wild vs cultivated). Besides, soil pH and phosphorus were the main factors influencing the fungal community structure. We observed a higher fungal diversity in cultivated compared to wild pearl millet. Interestingly, we detected higher relative abundance of putative pathotrophs, especially plant pathogen, in cultivated than in wild millet in semi-arid and semi-humid zones, and higher relative abundance of saprotrophs in wild millet in arid and semi-humid zones. A network analysis based on taxa co-occurrence patterns in the core mycobiome revealed that cultivated millet and wild relatives had dissimilar groups of hub taxa. The identification of the core mycobiome and hub taxa of cultivated and wild pearl millet could be an important step in developing microbiome engineering approaches for more sustainable management practices in pearl millet agroecosystems.

The plant rhizosphere microorganisms having the phosphate solubilizing capacity can convert the insoluble soil organic and inorganic phosphates into a soluble form and make the phosphorus (P) available to the plant. With the objective of evaluating the phosphate solubilizing microorganism populations under the rice rhizosphere, soils samples were collected in three locations of two agro-ecological zones of Cameroon and analyzed for their PSMs diversity. Isolation of microorganisms was made on non selective nutrient agar plates and the phosphate solubilizing activity of isolates was tested on National Botanical Research Institute's Phosphate growth medium (NBRIP) amended with sparingly soluble rock phosphates of different origins. The morphological description of isolates allowed evaluating the phosphate solubilizing microorganism's diversity under the rice rhizospheric soil. The most probable number of PSMs ranged between 22 and 53% with an average of 48%, 52.80% and 22.44% for Nkolbisson, Nyokon and Santchou respectively. The 65 isolates obtained from all locations were distributed in four diverse groups. The index of solubilization ranged between 2.70 and 7.24 depending on isolate. From a total of 65 isolates obtained from the three sampling sites, 46 were phosphate solubilizing isolates among which: 20 were of low solubilization, 16 of medium and 10 of high solubilization. This is the first work reporting phosphate solubilizing microorganisms on rice rhizosphere in Cameroon. However, the selection of phosphate solubilizing microorganisms as possible inoculation tools for phosphate-deficient soils should focus on the integral interpretation of laboratory assays, greenhouse experiments as well as field trials.