GPR41 and GPR43 are related members of a homologous family of orphan G protein-coupled receptors that are tandemly encoded at a single chromosomal locus in both humans and mice. We identified the acetate anion as an agonist of human GPR43 during routine ligand bank screening in yeast. This activity was confirmed after transient transfection of GPR43 into mammalian cells using Ca 2؉ mobilization and [ 35 S]guanosine 5-O-(3-thiotriphosphate) binding assays and by coexpression with GIRK G protein-regulated potassium channels in Xenopus laevis oocytes. Other short chain carboxylic acid anions such as formate, propionate, butyrate, and pentanoate also had agonist activity. GPR41 is related to GPR43 (52% similarity; 43% identity) and was activated by similar ligands but with differing specificity for carbon chain length, with pentanoate being the most potent agonist. A third family member, GPR42, is most likely a recent gene duplication of GPR41 and may be a pseudogene. GPR41 was expressed primarily in adipose tissue, whereas the highest levels of GPR43 were found in immune cells. The identity of the cognate physiological ligands for these receptors is not clear, although propionate is known to occur in vivo at high concentrations under certain pathophysiological conditions.Within family A of the G protein-coupled receptor (GPCR) 1 gene superfamily (also classified as family 1), there is a phylogenetically related group of ϳ90 receptors that respond to an unusually wide variety of ligand types, considering the relatively close similarity of their primary sequences (1). The group includes receptors that respond to purinergic or pyrimidinergic nucleotides (P2Y 1 , P2Y 2 , P2Y 4 , P2Y 6 , P2Y 11 , P2Y 12 , and P2Y 13 ), modified nucleotides (UDP-glucose), lipids (plateletactivating factor receptor), leukotrienes (BLT 1 and BLT 2 and CysLT 1 and CysLT 2 ), proteases (protease-activated receptor-1-4), chemoattractants (FPR1), and chemokines. To date, these receptors have no clear homologs in invertebrates, unlike the monoamine or neuropeptide receptors, suggesting a relatively recent evolutionary origin (2, 3). At least 50 GPCRs whose cognate ligands are unknown (orphans) (4) are categorized within this group on the basis of sequence homology. Often, these orphans fall into subsets, being more related to each other than to receptors with known ligands; and this, combined with the ligand diversity noted above, makes it difficult to predict the chemical nature of their ligands. One subset comprises GPR40 -43, which were identified as tandemly encoded genes present on cosmids isolated from human chromosomal locus 19q13.1 (5). GPR42 differs from GPR41 at only six amino acid positions; otherwise, the four members of this subfamily share ϳ30% minimum identity. BLAST searches have identified the next most closely related receptors as the proteaseactivated receptors. However, the long N-terminal extracellular domains that serve as protease substrates and that are characteristic of protease-activated receptors are absent in the GPR...

The targeting of molecular repertoires to complex systems rather than biochemically pure entities is an accessible approach that can identify proteins of biological interest. We have probed antigens presented by a monolayer of tumor cells for their ability to interact with a pool of aptamers. A glioblastoma-derived cell line, U251, was used as the target for systematic evolution of ligands by exponential enrichment by using a single-stranded DNA library. We isolated specifically interacting oligonucleotides, and biochemical strategies were used to identify the protein target for one of the aptamers. Here we characterize the interaction of the DNA aptamer, GBI-10, with tenascin-C, an extracellular protein found in the tumor matrix. Tenascin-C is believed to be involved in both embryogenesis and oncogenesis pathways. Systematic evolution of ligands by exponential enrichment appears to be a successful strategy for the a priori identification of targets of biological interest within complex systems. T he use of molecular repertoires is becoming increasingly important in the fields of drug discovery and biological research (1-3). These strategies involve the selection of combinatorially derived species. The most accessible techniques are based on the phage display of peptide or antibody libraries (4-8) and the use of libraries of oligonucleotides (9, 10). Systematic evolution of ligands by exponential enrichment (SELEX) is an iterative selection procedure used to identify oligonucleotides with desired properties, most often binding to a molecular target. The starting libraries (11,12) are as large as 10 15 unique sequences, some of which will be able to adopt secondary and tertiary structures (13). High-affinity oligonucleotide ligands to a plethora of high-and low-molecular-weight targets have been identified (3). However, the vast majority of these experiments have targeted biochemically pure entities.The targeting of complex systems with SELEX lends itself to the concept of a priori identification of targets of biological interest and possibly to in vivo efficacy of such bioactive molecules. Here we demonstrate oligonucleotide targeting of the glioblastoma cell line U251. Glioblastomas are the most common of the human brain malignancies (14-16). Their aggressive nature is believed to be due to a combination of hypervascularity, focal necrosis, and rapid cellular proliferation. The glioblastoma remains refractory to therapy because of tumor heterogeneity, local invasion, and nonuniform vascular permeability to drugs. Our goal was to generate oligonucleotide ligands that recognize tumor-associated proteins on͞within living cells, simultaneously identifying target proteins and DNA aptamers. Experimental ProceduresCell SELEX. Synthetic DNA template (10 pmol; Operon Technologies, Alameda, CA) containing 34 random nucleotides flanked by fixed regions 5Ј-GCCTGTTGTGAGCCTCCT-N34-CGCT-TATTCTTGTCTCCC-3Ј complementary to the primers 5Ј-BBB-GCCTGTTGTGAGCCTCCT-3Ј and 5Ј-GGGAGACAA-GA ATA AGCG-3, where BBB denotes three biotin ph...

Recent studies reveal that airway epithelial cells are critical pulmonary circadian pacemaker cells, mediating rhythmic inflammatory responses. Using mouse models, we now identify the rhythmic circadian repressor REV-ERBα as essential to the mechanism coupling the pulmonary clock to innate immunity, involving both myeloid and bronchial epithelial cells in temporal gating and determining amplitude of response to inhaled endotoxin. Dual mutation of REV-ERBα and its paralog REV-ERBβ in bronchial epithelia further augmented inflammatory responses and chemokine activation, but also initiated a basal inflammatory state, revealing a critical homeostatic role for REV-ERB proteins in the suppression of the endogenous proinflammatory mechanism in unchallenged cells. However, REV-ERBα plays the dominant role, as deletion of REV-ERBβ alone had no impact on inflammatory responses. In turn, inflammatory challenges cause striking changes in stability and degradation of REV-ERBα protein, driven by SUMOylation and ubiquitination. We developed a novel selective oxazole-based inverse agonist of REV-ERB, which protects REV-ERBα protein from degradation, and used this to reveal how proinflammatory cytokines trigger rapid degradation of REV-ERBα in the elaboration of an inflammatory response. Thus, dynamic changes in stability of REV-ERBα protein couple the core clock to innate immunity.

GPR55 is a G protein-coupled receptor activated by L-␣-lysophosphatidylinositol and suggested to have roles in pain signaling, bone morphogenesis, and possibly in vascular endothelial cells. It has affinity for certain cannabinoids (molecules that interact with the cannabinoid CB 1 and CB 2 receptors), but investigation of its functional role in cell-based systems and in tissue has been limited by a lack of selective pharmacological tools. Here, we present our characterization of GPR55 in the yeast Saccharomyces cerevisiae and in human embryonic kidney (HEK293) cells. We describe GSK494581A (1-{2-fluoro-4-[1-(methyloxy)ethyl]phenyl}-4-{[4Ј-fluoro-4-(methylsulfonyl)-2-biphenylyl]carbonyl}piperazine), a selective small-molecule ligand of GPR55 identified through diversity screening. GSK494581A is one of a series of benzoylpiperazines originally identified and patented as inhibitors of the glycine transporter subtype 1 (GlyT1). The structure-activity relationship between GPR55 and GlyT1 is divergent across this series. The most GPR55-selective example is GSK575594A (3-fluoro-4-(4-{[4Ј-fluoro-4-(methylsulfonyl)-2-biphenylyl]carbonyl}-1-piperazinyl) aniline), which is approximately 60-fold selective for GPR55 (pEC 50 ϭ 6.8) over GlyT1 (pIC 50 ϭ 5.0). Several exemplars with activity at GPR55 and GlyT1 have been profiled at a broad range of other molecular targets and are inactive at cannabinoid receptors and all other targets tested. The benzoylpiperazine agonists activate human GPR55 but not rodent GPR55, suggesting that the relatively low level of sequence identity between these orthologs (75%) translates to important functional differences in the ligand-binding site.