Gingipains from Porphyromonas gingivalis drive Alzheimer’s pathology and can be blocked with small-molecule inhibitors.

Citrullination is a post-translational modification of higher organisms that deiminates arginines in proteins and peptides. It occurs in physiological processes but also pathologies such as multiple sclerosis, fibrosis, Alzheimer’s disease and rheumatoid arthritis (RA). The reaction is catalyzed by peptidylarginine deiminases (PADs), which are found in vertebrates but not in lower organisms. RA has been epidemiologically associated with periodontal disease, whose main infective agent is Porphyromonas gingivalis. Uniquely among microbes, P. gingivalis secretes a PAD, termed PPAD (Porphyromonas peptidylarginine deiminase), which is genetically unrelated to eukaryotic PADs. Here, we studied function of PPAD and its substrate-free, substrate-complex, and substrate-mimic-complex structures. It comprises a flat cylindrical catalytic domain with five-fold α/β-propeller architecture and a C-terminal immunoglobulin-like domain. The PPAD active site is a funnel located on one of the cylinder bases. It accommodates arginines from peptide substrates after major rearrangement of a “Michaelis loop” that closes the cleft. The guanidinium and carboxylate groups of substrates are tightly bound, which explains activity of PPAD against arginines at C-termini but not within peptides. Catalysis is based on a cysteine-histidine-asparagine triad, which is shared with human PAD1-PAD4 and other guanidino-group modifying enzymes. We provide a working mechanism hypothesis based on 18 structure-derived point mutants.

Porphyromonas gingivalis is a member of the human oral microbiome abundant in dysbiosis and implicated in the pathogenesis of periodontal (gum) disease. It employs a newly described type-IX secretion system (T9SS) for secretion of virulence factors. Cargo proteins destined for secretion through T9SS carry a recognition signal in the conserved C-terminal domain (CTD), which is removed by sortase PorU during translocation. Here, we identified a novel component of T9SS, PorZ, which is essential for surface exposure of PorU and posttranslational modification of T9SS cargo proteins. These include maturation of enzyme precursors, CTD removal and attachment of anionic lipopolysaccharide for anchorage in the outer membrane. The crystal structure of PorZ revealed two β-propeller domains and a C-terminal β-sandwich domain, which conforms to the canonical CTD architecture. We further documented that PorZ is itself transported to the cell surface via T9SS as a full-length protein with its CTD intact, independently of the presence or activity of PorU. Taken together, our results shed light on the architecture and possible function of a novel component of the T9SS. Knowledge of how T9SS operates will contribute to our understanding of protein secretion as part of host-microbiome interactions by dysbiotic members of the human oral cavity.

Objectives To investigate the role of the periodontal pathogen Porphyromonas gingivalis in rheumatoid arthritis (RA) etiology, we have analysed the antibody response to P. gingivalis virulence factor arginine gingipainB (RgpB) in relation to anti-citrullinated protein antibodies (ACPA), smoking and HLA-DRB1 shared epitope (SE) alleles, in patients with periodontitis (PD) and RA, and in controls. Methods Anti-RgpB IgG was measured by ELISA in 65 PD patients and 59 non-PD controls, and in 1,975 RA cases and 377 non-RA controls from the Swedish population-based case-control study EIRA (Epidemiological Investigation of RA). Autoantibody status, smoking habits and genetic data were retrieved from the EIRA database. Differences in antibody levels were examined using Mann-Whitney U test. Unconditional logistic regression was used to calculate odds ratios (OR) with 95% confidence intervals (CI) for the association of anti-RgpB IgG with different RA subsets. Results Anti-RgpB antibody levels were significantly elevated in PD compared to non-PD; in RA compared to non-RA; and in ACPA-positive RA compared to ACPA-negative RA. There was a significant association between anti-RgpB IgG and RA (OR=2.96; 95% CI: 2.00–4.37), which was even stronger than the association between smoking and RA (OR=1.37; 95% CI: 1.07–1.74), and in ACPA-positive RA, there were interactions between anti-RgpB antibodies and both smoking and SE. Conclusion Our study suggests that the previously reported link between PD and RA could be accounted for by P. gingivalis infection, and we conclude that P. gingivalis is a credible candidate for triggering and/or driving autoimmunity and autoimmune disease in a subset of RA.