It is essential to use highly antigenic epitope areas, since the development of peptide vaccines heavily relies on the precise design of epitope regions that can elicit a strong immune response. Choosing epitope regions experimentally for the production of the SARS-CoV-2 vaccine can be time-consuming, costly, and labor-intensive. Scientists have created in silico prediction techniques based on machine learning to find these regions, to cut down the number of candidate epitopes that might be tested in experiments, and, as a result, to lessen the time-consuming process of their mapping. However, the tools and approaches involved continue to have low accuracy. In this work, we propose a hybrid deep learning model based on a convolutional neural network (CNN) and long short-term memory (LSTM) for the classification of peptides into epitopes or non-epitopes. Numerous transfer learning strategies were utilized, and the fine-tuned method gave the best result, with an AUC of 0.979, an f1 score of 0.902, and 95.1% accuracy, which was far better than the performance of the model trained from scratch. The experimental results obtained show that this model has superior performance when compared to other methods trained on IEDB datasets. Using bioinformatics tools such as ToxinPred, VaxiJen, and AllerTop2.0, the toxicities, antigenicities, and allergenicities, respectively, of the predicted epitopes were determined. In silico cloning and codon optimization were used to successfully express the vaccine in E. coli. This work will help scientists choose the best epitope for the development of the COVID-19 vaccine, reducing cost and labor and thereby accelerating vaccine production.
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<p>Accidents have contributed a lot to the loss of lives of motorists and serious damage to vehicles around the globe. Potholes are the major cause of these accidents. It is very important to build a model that will help in recognizing these potholes on vehicles. Several object detection models based on deep learning and computer vision were developed to detect these potholes. It is very important to develop a lightweight model with high accuracy and detection speed. In this study, we employed a Mask RCNN model with ResNet-50 and MobileNetv1 as the backbone to improve detection, and also compared the performance of the proposed Mask RCNN based on original training images and the images that were filtered using a Gaussian smoothing filter. It was observed that the ResNet trained on Gaussian filtered images outperformed all the employed models.</p>
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