Tissue-specific extinguisher-i (Tse-1) is a mouse genetic locus that can repress liver-specific tyrosine aminotransferase gene expression in trans. To search for other Tse-l-responsive genes, hepatoma microcell hybrids retaining mouse chromosome 11 or human chromosome 17, containing murine Tse-1 and human TSEI, respectively, were screened for expression of liver-specific mRNAs. While most liver gene activity was unaffected in such hybrids, phosphoenolpyruvate carboxykinase and tyrosine aminotransferase gene expression was coordinately repressed in these clones. Extinction of both genes was apparently mediated by a single genetic locus that resides on human chromosome 17.Cellular differentiation is generally viewed as an orchestrated process in which specific gene sets are activated or repressed at defined developmental times. These events culminate in the establishment of lineage-dependent patterns of transcription that are the basis of cell specialization. The molecular mechanisms that control these processes are poorly understood.Tissue-specific genes are primarily regulated at the level of transcription (1, 2), and discrete sequence elements are required in cis for proper developmental control (3). These observations support the widely-held view that trans-acting factors play key roles in regulating eukaryotic gene activity. Further analysis of this mechanism of gene control will require the characterization of specific regulatory factors in both genetic and biochemical terms.The first clear evidence for trans-regulation of differentiated functions in mammalian cells was reported by Davidson et al. in 1966 (4). They observed that melanoma-fibroblast hybrid cells failed to produce the melanin pigment characteristic of their differentiated melanoma parent. This "extinction" phenomenon proved to be both general and bidirectional: most stable hybrids formed by fusing distinctly different cell types fail to express the tissue-specific products of either parent (5, 6). However, extinguished traits can be reexpressed in hybrid segregants that have eliminated chromosomes of one of the parental cells (7-9). In reexpressing segregants, heterologous gene activation may be observed (10, 11). Thus, expression of tissue-specific genes can be manipulated experimentally in intertypic hybrids, and this provides a system with the potential to define genetic factors that regulate gene activity in trans.Liver-specific gene expression in intertypic hepatoma hybrids has been studied for many years, and, thanks largely to the work of Weiss and coworkers (7-11), this remains the most comprehensively analyzed hybrid cell system to date. Two important facts about tissue-specific gene expression in this system have recently been established. First, virtually all liver-specific gene activity is repressed in genotypically complete rat hepatoma-mouse fibroblast hybrids, but reexpression occurs upon loss of relatively few fibroblast chromosomes (12). Second, extinction of particular liver genes is mediated by discrete genetic loci...