2007
DOI: 10.1128/aem.02398-06
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Variable-Number Tandem Repeats as Molecular Markers for Biotypes of Pasteuria ramosa in Daphnia spp

Abstract: Variable-number tandem repeats (VNTRs) have been identified in populations of Pasteuria ramosa, a castrating endobacterium of Daphnia species. The allelic polymorphisms at 14 loci in laboratory and geographically diverse soil samples showed that VNTRs may serve as biomarkers for the genetic characterization of P. ramosa isolates.

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Cited by 21 publications
(30 citation statements)
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“…Three primer sets were used (primers marked with a star in Table 2). We tested the reliability of this method by mixing different proportions of spores from the isolates P1 and P3 whose allele sizes had been previously determined for the different primer sets (Mouton et al 2007), and determined the relative proportion of each isolate after amplifying samples with five sets of primers ( (Fig. 1).…”
Section: Genetic Molecular Analysismentioning
confidence: 99%
See 1 more Smart Citation
“…Three primer sets were used (primers marked with a star in Table 2). We tested the reliability of this method by mixing different proportions of spores from the isolates P1 and P3 whose allele sizes had been previously determined for the different primer sets (Mouton et al 2007), and determined the relative proportion of each isolate after amplifying samples with five sets of primers ( (Fig. 1).…”
Section: Genetic Molecular Analysismentioning
confidence: 99%
“…• C for 2-3 h. Final elution volume was 100 l. PCR amplification and automatic genotyping are as described elsewhere (for details, see Mouton et al 2007). The relative quantification of the different P. ramosa isolates within a single host was determined by calculating the ratio of respective peak heights of the isolatespecific alleles on the electropherogram.…”
Section: Genetic Molecular Analysismentioning
confidence: 99%
“…First, we employ a clone of P. ramosa (single genotype), not field isolates. Field isolates may contain more than one parasite clone (Jensen et al, 2006;Mouton et al, 2007;Ben-Ami et al, 2008;Luijckx et al, 2011). The use of P. ramosa clones negates the complicating factors intrinsic to mixed infections and allows for a more definitive interpretation of experimental results .…”
Section: Introductionmentioning
confidence: 99%
“…Thus far, few species-specific molecular markers have been developed for Daphnia parasites (33,38,39,41) and then used in experimental studies (3). In surveys of natural Daphnia populations, parasite identification has been based primarily on microscopic examination (4,5,29,52), with only one exception (32).…”
mentioning
confidence: 99%