Plasmodium falciparum msp-1 and msp-2 genes were quantified by fragment analysis in matched placental, peripheral, and cord blood samples. In the three compartments, the multiplicity of infection values were similar, and parasite populations only partially overlapped, as reported. However, identical alleles represented 80 to 95% of the overall parasite populations of each compartment, demonstrating much more homogenous parasite populations than previously thought.In areas where malaria is endemic, it is a major cause of morbidity and mortality. During pregnancy, especially the first pregnancy, women are more susceptible and more frequently infected with high levels of placental parasitemia, causing complications for both mothers and newborn babies (5). The mature forms of Plasmodium falciparum sequester in deep microvessels in cerebral malaria and in placental intervillous spaces in pregnant women, while ring stages circulate in the peripheral blood. This phenomenon distorts the analysis of parasites in peripheral blood, revealing only parasites circulating at sampling time. With respect to pregnancy, few studies have investigated the homology of parasite populations from placental, peripheral (21), and cord (12, 13) blood from women at delivery. These studies mostly agree in showing parasite populations partially overlapping and marked differences in the various compartments from most women. While these studies (based on PCR genotyping of polymorphic markers) allow the identification of alleles, they don't permit their quantification. Alternatively, in this work, an attempt was made to obtain quantitative data on allele distribution. We quantified the differences in Plasmodium falciparum msp-1 and msp-2 polymorphisms in matched peripheral and placental samples and matched placental and cord blood samples by using a fragment analysis method.This study was carried out in Thiadiaye, southeast of Dakar. A total of 281 pregnant women were sequentially enrolled and followed until delivery. Placental, peripheral, and cord blood samples were obtained after delivery from all women. Genomic DNA was extracted from the placenta blood samples, and a P. falciparum species-specific PCR (22) identified 60 positive samples. A similar PCR assay performed on the corresponding 60 peripheral and 60 cord blood samples identified 39 positive placental/peripheral blood pairs and 11 positive placental/cord blood pairs. The study was approved by the ethical committee, Ministry of Health, Senegal, and informed consent was obtained from all patients.A fluorescent PCR analyzed block 3 and block 2 of the msp-2 and of msp-1 domains, as described (11). Primers were msp-1 f-5Ј-CACATGAAAGTTATCAAGAACTTGTC-3Ј (sense, fluorescein labeled) and 5Ј-GTACGTCTAATTCCAT TTGCACG-3Ј (antisense) and msp-2 f-5Ј-GAAGGTAATTA AAACATTGTC-3Ј (sense, fluorescein labeled) and 5Ј-GAG GGATGTTGCTGCTCCACA-3Ј (antisense) (Genset SA Europe) (19). Amplification products were processed in an ABI Prism 310 genetic analyzer (Perkin Elmer Applied Biosystems) and analyzed using...