One-and twedimensional sodium dodecylsulfate-polyacly lamide gel electrophoresis and immunological analyses were used to visualize dijferences i n polypeptides synthesized by Symbiodinium sp. from the anemone Aiptasia pallida when grown i n the cultured and endosymbiotic states (freshly isolated zooxanthellae). Surprisingly, a comparison of proteins in cultured and endosymbiotic Symbiodinium sp. revealed only four major polypeptides with similar isoelectric and molecular mass characteristics. Using monospeci$c antibodies, we demonstrated differences in .spec@ proteins synthesized lq the dinoflagellate in the two dgerent growth states. The dimeric, 14 kDa f m of the peripheral membrane peridinin-chlorophyll a binding pre tein predominates under endosymbiotic conditions, whereas the mon.omm'c, 35 kDa fm predominates under the culture conditions used i n this study. Antibodies to form II ribulose-1,5-bisphosphate carboxylase revealed 62 and 60 kDa ,forms of this protein i n the alga grown as a n e n d e symbiont and in, culture, respectively. Differences in the integral membrane p~~i n i n -c h l~o p h y l l a-c-binding proteins were also observed. These results demonstrate that there are major changes in the populations of proteins synthesized by Symbiodinium sp. in response to the conditions in hospite. Such changes may reflect a developmental switch that tailors the physiology of the alga to the conditions encountered in the endosymbiotic state.Kqy index words: dqferential protein expression; peridinin-chlorophyll a-binding proteins; peridinin-chlorophyll a/c-binding proteins; ribulose-1,5-bisphosphate carboxyluse; symbiosis; two-dimensional gel electrophoresis; western blot analysisIn the marine environment, symbiotic associations occur between photosynthetic algae and more than 250 species of nonphotosynthetic organisms, including cnidarians, sponges, platyhelminths, ascidians, molluscs, and protozoans (reviewed in Trench 1993). Of these, perhaps the best studied is the association between cnidarians and their dinoflagellate endosymbionts, the majority of which are of the genus Symbiodinium (Trench 1993). These dinoflagellates are members of the group of endosymbiotic algae commonly called zooxanthellae. In algal/cnidarian symbioses, zooxanthellae contribute to the growth and maintenance of their hosts by providing photosynthetically fixed carbon (reviewed in Trench