2013
DOI: 10.1183/09031936.00115412
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Transcriptome sequencing (RNA-Seq) of human endobronchial biopsies: asthmaversuscontrols

Abstract: The cellular and molecular pathways in asthma are highly complex. Increased understanding can be obtained by unbiased transcriptomic analysis (RNA-Seq). We hypothesised that the transcriptomic profile of whole human endobronchial biopsies differs between asthma patients and controls.First, we investigated the feasibility of obtaining RNA from whole endobronchial biopsies suitable for RNA-Seq. Secondly, we examined the difference in transcriptomic profiles between asthma and controls. This cross-sectional study… Show more

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Cited by 74 publications
(64 citation statements)
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“…However, while PDE4 is found in human airway smooth muscle, it is now clear from a number of clinical studies with a variety of PDE4 inhibitors administered either orally [52,53] or by inhalation [54], that this drug class is not able to induce acute bronchodilation [38]. In contrast, a number of selective PDE3 inhibitors have been shown to be bronchodilators in man [55,56] and, indeed, recently, PDE3 has been documented to be upregulated in airway smooth muscle obtained from patients with asthma [57].…”
Section: Bifunctional Bronchodilator/anti-inflammatory Drugsmentioning
confidence: 99%
“…However, while PDE4 is found in human airway smooth muscle, it is now clear from a number of clinical studies with a variety of PDE4 inhibitors administered either orally [52,53] or by inhalation [54], that this drug class is not able to induce acute bronchodilation [38]. In contrast, a number of selective PDE3 inhibitors have been shown to be bronchodilators in man [55,56] and, indeed, recently, PDE3 has been documented to be upregulated in airway smooth muscle obtained from patients with asthma [57].…”
Section: Bifunctional Bronchodilator/anti-inflammatory Drugsmentioning
confidence: 99%
“…Pendrin up-regulation is seen in: 1) airway epithelial cultures chronically exposed to cytokines, including IL-4, IL-13, and IL-17A; 2) rodent models of inflammatory lung disease, including allergen (ovalbumin)-induced asthma, chronic obstructive pulmonary disease, infection, and industrial toxin exposure; and 3) humans with rhinovirus infection, asthma, cystic fibrosis (CF), rhinitis, and chronic rhinosinusitis (10,11,(17)(18)(19)(20)(21)(22)(23)(24)(25). Pendrin knockout is also associated with reduced lung inflammation in a murine model of Bordetella pertussis lung infection (26).…”
mentioning
confidence: 99%
“…Finally, Nicholas Carbonetti (University of Maryland, Baltimore, MD, USA) described the upregulation of pendrin in the lungs of B. pertussis-infected mice and baboons. An epithelial HCO 3 Ϫ /Cl Ϫ exchanger, pendrin is involved in asthma pathology in humans (17). B. pertussis-infected pendrin knockout mice showed reduced inflammatory pathology but higher bacterial loads in the lungs.…”
Section: Virulence Factors and Pathogenesismentioning
confidence: 99%