In a beach morphological process, such as a formation of a sand bar and a beach cusp, sediment sorting plays an important role. To describe a mechanism of sediment sorting directly, the movable bed simulator, which is a granular material model based on the distinct element method, is used. In this paper, a hydraulic experiment using an oscillatory water tunnel is conducted to track motion of sediment particles under vertical sorting in sheetflow regime. The three dimensional movable bed simulator is driven to track detailed motion of individual sediment particles numerically. Performance of the movable bed simulator as a tool of computational dynamics is shown by comparing simulated physical properties, such as series of instantaneous images, velocity profile and number-density distribution of sediment particles, with the result of the experiment.