Aggrecan-derived chondroitin sulfate (CS) chains, released by -elimination, were derivatized with p-aminobenzoic acid or p-aminophenol; radioiodinated; and subjected to graded or complete degradations by chondroitin ABC lyase to generate linkage region fragments of the basic structure ⌬GlyUA-GalNAc-GlcUA-Gal-GalXyl-R (where ⌬GlyUA represents 4,5-unsaturated glycuronic acid, and R is the adduct), by chondroitin AC lyase to generate the shorter fragment ⌬GlyUA-Gal-Gal-Xyl-R, or by chondroitin C lyase to generate the same fragment when it was linked to a 6-O-sulfated or unsulfated GalNAc at the nonreducing end. Fragments were separated by size using gel chromatography, by charge using ionexchange chromatography, and by size/charge using electrophoresis and then characterized by stepwise degradations from the nonreducing end by using mercuric acetate to remove all terminal ⌬GlyUA, by bacterial glycuronidase to remove the same residue when linked to unsulfated or 6-O-sulfated GalNAc/Gal, by mammalian 4-sulfatase to remove sulfate from terminal GalNAc 4-Osulfate, by chondro-4-sulfatase to remove 4-O-sulfate from other GalNAc/Gal residues, and by -galactosidase to remove terminal Gal. Results with CS from bovine nasal cartilage aggrecan show that, in nearly all chains, Xyl and probably also the first Gal are unsubstituted, whereas the second Gal is 4-O-sulfated in one CS chain out of five. The first disaccharide repeat is sulfated at C-4 of GalNAc in one chain out of three and unsulfated in the other two. A sulfated first disaccharide is always joined to an unsulfated GlcUA-Gal-Gal sequence. In contrast, CS from human articular cartilage usually has a sulfated first disaccharide repeat. In CS from young human cartilage, sulfate groups are mostly at C-4 of GalNAc in the major part of the chain, but at C-6 in the nonreducing distal portion. In CS from old cartilage, sulfation at C-6 of GalNAc is a major feature from the nonreducing end down to approximately positions 4 and 5 from the linkage region, where GalNAc 4-O-sulfate is common.Proteoglycans constitute a family of proteins that are characterized by the presence of covalently attached glycosaminoglycan (GAG) 1 side chains and are found at cell surfaces, in pericellular matrices, and especially in the extracellular matrix of connective tissues. Proteoglycans are structurally diverse; core proteins may vary in size from 10 to 400 kDa, and they can contain only a single GAG chain or well over 100. The GAG chains have unique biophysical properties that contribute to the bulk effects of proteoglycans, but they also contain a variety of binding sites for various extracellular cytokines, growth factors, enzymes, and inhibitors (for reviews, see Ref. 1-4).The GAG chains are linear polymers of repeating disaccharides containing hexosamine and hexuronic acid (or, in the case of keratan sulfate, galactose). Hexuronic acid-containing GAGs are bound to serine residues in the core protein via the common carbohydrate sequence -4GlcUA1-3Gal1-3Gal1-4Xyl1-, forming the so-calle...