To overcome some of the challenges in characterizing heterogeneous nanostructured amorphous materials, we developed a new TEM method, RDF imaging, combining scanning transmission electron microscopy diffraction mapping with radial distribution function (RDF) analysis followed by hyperspectral analysis, to enable phase analysis and mapping of heterogeneous amorphous structures purely based on their short-and medium range atomic order. We applied this method to an amorphous zirconium oxide and zirconium iron multilayer system, demonstrating an extreme sensitivity of the method to small atomic packing variations. This approach has great potential to understand local structure variations in glassy composite materials and to provide new insights to correlate structure and properties of glasses.