“…Since MHCII genes (H2-Eb1, Ab1, Aa, DMb1, DMa) are associated with DCs, we partitioned subpopulations 0, 1 and 3 based on their expression, specifically on H2-Eb1 (Figure S2K-L). As expected, the MHCII + compartment exhibited elevated expression of genes associated with monocyte-derived DCs, including Cd209a, Cd74, and Nr4a3 (Boulet et al, 2019; Ponichtera et al, 2014; Stables et al, 2011) (Figure 2F and Supplemental Table 2C). The remaining non-DC MHCII - fraction was enriched for genes that are known to regulatory function in inflammation, lipid metabolism and angiogenesis including Crip2, Fxyd2, and Rnase4 (Cheung et al, 2011; Li et al, 2013; Mayan et al, 2018) (Figure 2G and Supplemental Table 2C).…”