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RESEARCH ARTICLE
INTRODUCTIONHigher order chromatin structure is important for epigenetic regulation and control of gene activation and silencing. In eukaryotes, a considerable proportion of the genome is packaged into constitutive heterochromatin or facultative heterochromatin that represents transiently condensed and silenced euchromatin (Schotta et al., 2003). Formation of heterochromatin and repression of transcription involves covalent modifications of histone tails and/or the exchange of histone variants (Swaminathan et al., 2005). Current evidence suggests that a major pathway in the establishment of heterochromatin is initiated by the RNAi machinery that marks prospective heterochromatic regions (Volpe et al., 2002;Pal-Bhadra et al., 2004;Verdel et al., 2004). This leads to the deacetylation of histone H3K9, followed by the dimethylation of this residue and the recruitment of HP1 (Lachner et al., 2001;Nakayama et al., 2001;Ebert et al., 2004). Thus, dimethylation of histone H3K9 and the presence of HP1 serve as major chromatin modification markers for the presence of transcriptionally silenced chromatin (Fischle et al., 2003;Swaminathan et al., 2005). However, it should be noted that HP1 recently has been demonstrated to also play a role in euchromatic gene regulation that is not linked to histone H3K9 dimethylation (Piacentini et al., 2003;Cryderman et al., 2005).Ebert et al. (Ebert et al., 2004) recently identified the Su(var)3-1 mutations as alleles of the JIL-1 locus that antagonize the expansion of heterochromatin formation in Drosophila. JIL-1 is a tandem kinase that localizes specifically to euchromatic interband regions of polytene chromosomes (Jin et al., 1999). Analysis of JIL-1 null and hypomorphic alleles showed that JIL-1 is essential for viability, and that reduced levels of JIL-1 protein lead to a global disruption of chromosome structure (Jin et al., 2000;Wang et al., 2001;Zhang et al., 2003;Deng et al., 2005). These defects are correlated with severely decreased levels of histone H3S10 phosphorylation (pH3S10), providing evidence that JIL-1 is the predominant kinase regulating the phosphorylation state of this residue at interphase (Wang et al., 2001).However, as the Su(var)3-1 alleles generate proteins with COOHterminal deletions that are dominant gain-of-function mutations, the experiments of Ebert et al. (Ebert et al., 2004) did not directly address the normal function of JIL-1. In this study, we show that the reduction in JIL-1 protein levels and histone H3S10 phosphorylation caused by hypomorphic or null loss-of-function alleles of the JIL-1 locus results in the spreading of the major heterochromatin markers dimethyl H3K9 (dmH3K9) and HP1 to ectopic locations on the chromosome arms, with the most pronounced increase on the X chromosomes. Furthermore, genetic interaction assays demonstrated that JIL-1 functions antagonistically to Su(var)3-9, which is the major catalyst for dimethylation of the histone H3K9 residue (Schotta et al., 2002). These findings suggest a mode...