Signal transduction via light-dependent redox control of reversible thylakoid protein phosphorylation has evolved in plants as a unique mechanism for controlling events related to light energy utilization. Here we report for the first time that protein phosphorylation can be activated without light or the addition of reducing agents by a transient exposure of isolated thylakoid membranes to low pH in darkness. The activation of the kinase after incubation of dark-adapted thylakoids at pH 4.3 coincides with an increase in the plastoquinol: plastoquinone ratio up to 0.25. However, rapid plastoquinol reoxidation (<1 min) at pH 7.4 contrasts with the slow kinase deactivation (t1 ⁄2 ؍ 4 min), which indicates that the redox control is not directly dependent on the plastoquinone pool. Use of inhibitors and a cytochrome bf-deficient mutant of Lemna demonstrate the involvement of the cytochrome bf complex in the low-pH induced protein phosphorylation. EPR spectroscopy shows that subsequent to the transient low pH treatment and transfer of the thylakoids to pH 7.4, cytochrome f, the Rieske Fe-S center, and plastocyanin become reduced and are not reoxidized while the kinase is slowly deactivated. However, the deactivation correlates with a decrease of the EPR g z signal of the reduced Rieske Fe-S center, which is also affected by quinone analogues that inhibit the kinase. Our data point to an activation mechanism of thylakoid protein phosphorylation that involves the binding of plastoquinol to the cytochrome bf complex in the vicinity of the reduced Rieske Fe-S center.Protein phosphorylation plays a major role in cellular signaling, developmental processes, and metabolism regulation of living cells (1-3). In chloroplasts a unique light mediated redox-controlled phosphorylation (4 -7) of a number of proteins associated with the thylakoid membrane has evolved. Phosphorylation of the major light-harvesting chlorophyll a/b protein complex (LHCII) 1 regulates the balance of excitation energy between the two photosystems (5, 6, 8), protects oxygen-evolving organisms against photoinhibition by excessive light excitation (9) and may affect the process of LHCII degradation related to the long term acclimation of the light-harvesting antenna size to the prevailing ambient light intensity (10). Other identified phosphoproteins belong to photosystem II and include the D1 and D2 reaction center protein subunits as well as the chlorophyll a binding protein CP43 and the 9-kDa psbH protein (11,12). Phosphorylation of the D1 polypeptide in higher plants is implicated in the regulation of its degradation during the light induced turnover and repair of photoinhibitory damage to the photosystem II reaction center (13-16).The specific mechanism involved in the redox-mediated activation of the thylakoid kinase(s) is not yet understood. Activation of thylakoid protein phosphorylation is dependent on the redox state of the plastoquinone pool (5-7). In cytochrome bf-deficient mutants of algae (17) and higher plants (18 -20) the redox-controlle...