The complete mitochondrial genome of Hipparchia autonoe (Esper, 1783) (Lepidoptera: Nymphalidae): investigation of intraspecific variations on mitochondrial genome

Abstract

Hipparchia autonoe (Esper, 1783) is a protected butterfly species found in Mt. Halla in South Korea. We have determined mitochondrial genome of H. autonoe collected in Mt. Halla. The circular mitogenome of H. autonoe is 15,300 bp long, which is shorter than previously sequenced mitogenome by 189 bp due to differences of tandem repeats. It includes 13 protein-coding genes, 2 ribosomal RNA genes, and 22 transfer RNAs. The base composition was AT-biased (78.9%). Nineteen single nucleotide polymorphisms and one insertion and deletion were identified between the two individuals of H. autonoe captured in Mt. Halla, presenting enough genetic diversity of H. autonoe within population.

The complete mitochondrial genome of Ricania speculum (Walker, 1851) (Hemiptera: Ricaniidae): investigation of intraspecific variations on mitochondrial genome

“…Twenty-five of the 86 SNPs in PCGs were non-synonymous while 52 were synonymous, which is similar to the ratio found in Hipparchia autonoe (Lepidoptera), 5:11, showing the total number of SNPs is irrelevant to the ratio of the SNPs (Lee et al. 2020 ). The remaining 9 SNPs were found in 3′ end of nad2 and were unable to be determined either synonymous or not as preceding INDELs caused frame shifts.…”

The second complete mitochondrial genome of Alphitobius diaperinus Panzer, 1797 (Coleoptera: Tenebrionidae): investigation of intraspecific variations on mitochondrial genome

“…One SNP is non-synonymous SNP changing 142 nd amino acid of NAD4 from methionine to valine. Number of intraspecific variations identified in this study is similar to that of Laodelphax striatellus between D5 and D7 isolates ) but much less than those of Hipparchia autonoe (Lee et al 2020), Aphis gossypii (Park, Xi, Kim, et al 2019) (Bae et al accepted), Laodelphax striatellus , Nilaparvata lugens (Choi et al 2019;Choi et al 2020), Spodoptera frugiperda (Seo, Lee, et al 2019), and Chilo suppresallis (Park, Xi, Kwon, et al 2019).…”

“… 2019 ) but much less than those of Hipparchia autonoe (Lee et al. 2020 ), Aphis gossypii (Park, Xi, Kim, et al 2019 ) (Bae et al. accepted ), Laodelphax striatellus (Park, Jung, et al.…”

A Comparative Analyses of the Complete Mitochondrial Genomes of Fungal Endosymbionts in Sogatella furcifera, White-Backed Planthoppers

“…The circular form of mitogenomes was confirmed by the pair-end reads connecting both sides of mitogenomes. All these bioinformatic analyses were conducted under the environment of the Genome Information System (GeIS; http://geis.infoboss.co.kr/ ) like the previous studies of mitogenomes [ 19 , 21 – 24 , 26 , 28 , 30 , 32 , 33 , 36 , 43 – 91 ].…”

“…There is a relatively small number of intraspecific SNPs and INDELs identified from these fungal mitogenomes in comparison to those of other fungal mitogenomes, for [56]. They are also fewer than those identified in insect mitogenomes [10,22,23,43,[45][46][47][48][49][50][51].…”