The complete mitochondrial genome of Nilaparvata lugens (Stål, 1854) captured in Guangxi province, China (Hemiptera: Delphacidae): identification of the origin of N. lugens migrated to Korea

Abstract

Nilaparvata lugens, called as brown planthoppers (BPH), is one of important pests on rice. To identify the origin of Korean N. lugens, we completed mitochondrial genome of N. lugens captured in Guangdong province in China. The circular mitogenome of N. lugens is 17,606 bp including 13 proteincoding genes, two ribosomal RNA genes, 22 transfer RNAs, and a single large non-coding region of 2424 bp. The base composition was AT-biased (89.5%). 90 single nucleotide polymorphisms (SNPs) and 10 insertions and deletions are identified by comparing with Korean N. lugens. Phylogenetic trees present that Guangdong BPH may not be an origin of Korean BPH based on distance of two mitochondrial genomes.

The complete mitochondrial genome of Aphis gossypii Glover, 1877 (Hemiptera: Aphididae) isolated from Plantago asiatica in Korea

“…Sixty-six single nucleotide polymorphisms (SNPs) and 176 insertions and deletions (INDELs) and 11 SNPs and 173 INDELs are identified against those of Chinese and Korean A. gossypii, respectively. These numbers of sequence variations are similar to those of Nilaparvata lugens (Choi et al 2019;Choi et al 2020), Laodelphax striatellus , and Spodoptera frugiperda (Seo, Lee, et al 2019). It is smaller than that of Chilo suppresallis .…”

The second complete mitochondrial genome of Alphitobius diaperinus Panzer, 1797 (Coleoptera: Tenebrionidae): investigation of intraspecific variations on mitochondrial genome

“…One SNP is non-synonymous SNP changing 142 nd amino acid of NAD4 from methionine to valine. Number of intraspecific variations identified in this study is similar to that of Laodelphax striatellus between D5 and D7 isolates ) but much less than those of Hipparchia autonoe (Lee et al 2020), Aphis gossypii (Park, Xi, Kim, et al 2019) (Bae et al accepted), Laodelphax striatellus , Nilaparvata lugens (Choi et al 2019;Choi et al 2020), Spodoptera frugiperda (Seo, Lee, et al 2019), and Chilo suppresallis (Park, Xi, Kwon, et al 2019).…”

“… 2019 ; Choi et al. 2020 ), Spodoptera frugiperda (Seo, Lee, et al. 2019 ), and Chilo suppresallis (Park, Xi, Kwon, et al 2019 ).…”

The Complete Chloroplast Genome of Arabidopsis thaliana Isolated in Korea (Brassicaceae): An Investigation of Intraspecific Variations of the Chloroplast Genome of Korean A. thaliana

“…Instead, this phenomenon was found in genome studies focusing on intraspecific variations of insect, fungal, and marine invertebrate mitochondria. These include Laodelphax striatellus [ 93 , 94 ] and Nilaparvata lugens [ 95 – 97 ] belonging to the Delphacidae family; Fusarium oxysporum which is a fungal plant pathogen [ 98 , 99 ] and Apostichopus japonicus [ 100 ]. Because A. thaliana has a sufficient amount of sequencing data to construct chloroplast genomes, additional studies with more complete chloroplast genomes will provide a clear answer as to whether or not this phenomenon remains.…”