Terrimonas rubra sp. nov., isolated from a polluted farmland soil and emended description of the genus 
               
                  Terrimonas

Zhang, Jing; Gu, Tao; Zhou, Yu; He, Jie; Zheng, Liu-Qiang; Li, Wenjun; Huang, Xing; Li, Shunpeng

doi:10.1099/ijs.0.036079-0

Cited by 39 publications

(19 citation statements)

References 15 publications

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“…Oxidase activity was tested using oxidase reagent (bioMérieux) according to the manufacturer's instructions. Catalase activity was determined by observing bubble production after adding 3.0 % (w/v) H 2 O 2 to the fresh biomass (Zhang et al 2012). Voges-Proskauer test and H 2 S production was tested according to the methods described by Dong and Cai (2001).…”

Section: Morphological Physiological and Biochemical Characteristicsmentioning

confidence: 99%

Ferrovibrio xuzhouensis sp. nov., a cyhalothrin-degrading bacterium isolated from cyhalothrin contaminated wastewater

Song

Zhang

Sun

et al. 2015

Antonie van Leeuwenhoek

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A novel cyhalothrin-degrading strain, designated as LM-6(T), was isolated from a cyhalothrin contaminated wastewater sample. The bacterium was found to be Gram stain-negative, non-spore-forming, vibrio-shaped, and motile with a single polar flagellum. Strain LM-6(T) was observed to grow optimally at 28-30 °C, pH 6.0 and in the absence of NaCl. Phylogenetic analysis based on 16S rRNA gene sequence comparisons revealed that strain LM-6(T) is a member of the genus Ferrovibrio, and showed the highest sequence similarity with Ferrovibrio denitrificans Sp-1(T) (97.7 %), followed by Taonella mepensis H1(T) (93.3 %). The major fatty acids of strain LM-6(T) (>5 %) were determined to be C18:1 ω7c and/or C18:1 ω6c, C16:0, C18:1 2-OH and C17:1 iso I and/or anteiso B. The major polar lipids were identified to be phosphatidylglycerol, phosphatidylethanolamine and phosphatidylmethylethanolamine. The major respiratory quinone was determined to be ubiquinone-10. The genomic DNA G+C content of strain LM-6(T) is 66.5 mol %. Strain LM-6(T) showed low DNA-DNA relatedness with F. denitrificans Sp-1(T) (53.1 ± 0.5 %). On the basis of phylogenetic, genomic, phenotypic and chemotaxonomic data, strain LM-6(T) is considered to represent a novel species of the genus Ferrovibrio, for which the name Ferrovibrio xuzhouensis sp. nov. is proposed. The type strain is Ferrovibrio xuzhouensis LM-6(T) (=KCTC 42182(T) = ACCC 19710(T)).

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Section: Morphological Physiological and Biochemical Characteristicsmentioning

confidence: 99%

Ferrovibrio xuzhouensis sp. nov., a cyhalothrin-degrading bacterium isolated from cyhalothrin contaminated wastewater

Song

Zhang

Sun

et al. 2015

Antonie van Leeuwenhoek

Self Cite

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“…HQ-2 and HQ-3 were clustered together as members of the family Chitinophagaceae. Some bacterial strains of this family have been isolated from bulking sludge, polluted farmland, and freshwater springs, and these bacteria may be effective for removing pollutants [12,40]. HQ-7, as the other clade, belongs to the family Cyclobacteriaceae.…”

Section: Phylogenetic Analysis Of the Bacterial Communitiesmentioning

confidence: 99%

Spatial Abundance and Diversity of Bacterioplankton in a Typical Stream-Forming Ecosystem, Huangqian Reservoir, China

Wei

Li²,

Wang³

et al. 2014

Journal of Microbiology and Biotechnology

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The specific freshwater environment of reservoirs formed by streams has not been well studied. In this paper, the bacterioplankton community in such a reservoir, the Huangqian Reservoir in eastern China, was described using culture-independent molecular methods. We found that the most dominant bacterioplankton were affiliated with Cyanobacteria, followed by Betaproteobacteria, Bacteroidetes, Gammaproteobacteria, and Actinobacteria. Both bacterial abundance and diversity increased along the direction of water flow, and the 16S rRNA gene copy number in the water outlet was nearly an order of magnitude higher than that in the water inlet. Pearson correlation analyses indicated that nitrate had a significantly negative correlation with the bacterial abundance (p < 0.05) and that ammonium was positively correlated with bacterial abundance (p < 0.05). Interestingly, owing to a remarkably negative correlation (p < 0.01), the ratio of nitrate and ammonium might serve as a good pre dictor of the relative abundance of bacterioplankton. According to redundancy analysis, nitrate and dissolved oxygen were the major factors influencing the bacterial communities. In addition, we attempted to determine the reasons why such a reservoir could maintain good ecological balance for a period of decades, and we found that the environmental factors and bacterial communities both played critical roles. This research will benefit our understanding of bacterial communities and their surrounding environments in freshwater ecosystems.

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“…The genus Terrimonas, belonging to the family Chitinophagaceae within the phylum Bacteroidetes, was first described by Xie & Yokota (2006) and its description was subsequently emended by Zhang et al (2012) and Jin et al (2013). The type strains of the recognized species of the genus are strictly aerobic, Gram-staining-negative, nonmotile, non-gliding bacteria containing menaquinone-7 (MK-7) as the major respiratory quinone (Xie & Yokota, 2006;Zhang et al, 2012;Jin et al, 2013).…”

mentioning

confidence: 99%

“…The type strains of the recognized species of the genus are strictly aerobic, Gram-staining-negative, nonmotile, non-gliding bacteria containing menaquinone-7 (MK-7) as the major respiratory quinone (Xie & Yokota, 2006;Zhang et al, 2012;Jin et al, 2013). At the time of writing, the genus Terrimonas comprised five recognized species isolated from various environments, such as garden soil, a freshwater spring, polluted farmland soil and bulking sludge; namely Terrimonas ferruginea (the type species) and Terrimonas lutea (Xie & Yokota, 2006), Terrimonas aquatica (Sheu et al, 2010), Terrimonas rubra (Zhang et al, 2012) and Terrimonas pekingensis (Jin et al, 2013). During the course of an investigation into the culturable bacterial community in the soil from a high Arctic tundra near the settlement, Ny-Å lesund (78 u 589 N 12 u 039 E), in the Svalbard Archipelago, Norway, a large number of bacteria were isolated.…”

mentioning

confidence: 99%

Terrimonas arctica sp. nov., isolated from Arctic tundra soil

Jiang

Qiu

Chang

et al. 2014

International Journal of Systematic and Evolutionary Microbiology

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A novel, Gram-stain-negative, aerobic, non-motile and rod-shaped bacterium, designated R9-86 T , was isolated from tundra soil collected near Ny-Å lesund, Svalbard Archipelago, Norway (786 N). Growth occurred at 4-28 6C (optimum, 22-25 6C) and at pH 6.0-9.0 (optimum, pH 7.0). Flexirubin-type pigments were absent. Phylogenetic analysis based on 16S rRNA gene sequences indicated that strain R9-86 T belonged to the genus Terrimonas in the family Chitinophagaceae. 16S rRNA gene sequence similarities between strain R9-86 T and the type strains of species of the genus Terrimonas with validly published names ranged from 93.7 to 95.0 %. Strain R9-86 T contained iso-C 15 : 1 -G (25.7 %), iso-C 15 : 0 (24.5 %), iso-C 17 : 0 -3OH (18.3 %) and summed feature 3 (C 16 : 1 v7c and/or C 16 : 1 v6c, 8.7 %) as its major cellular fatty acids; phosphatidylethanolamine and an unknown polar lipid as its main polar lipids, and MK-7 as its predominant respiratory quinone. The DNA G+C content was 48.4 mol%. On the basis of phenotypic, chemotaxonomic and phylogenetic data, strain R9-86 T is considered to represent a novel species of the genus Terrimonas, for which the name Terrimonas arctica sp. nov. is proposed. The type strain is R9-86 T (5CCTCC AB 2011004 T 5NRRL B-59114 T ).

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Terrimonas rubra sp. nov., isolated from a polluted farmland soil and emended description of the genus Terrimonas

Abstract: Terrimonas rubra sp. nov., isolated from a polluted farmland soil and emended description of the genus Terrimonas , was isolated from a polluted farmland soil sample in China and was characterized in a taxonomic study using a polyphasic approach.

Cited by 39 publications

References 15 publications

Ferrovibrio xuzhouensis sp. nov., a cyhalothrin-degrading bacterium isolated from cyhalothrin contaminated wastewater

Ferrovibrio xuzhouensis sp. nov., a cyhalothrin-degrading bacterium isolated from cyhalothrin contaminated wastewater

Spatial Abundance and Diversity of Bacterioplankton in a Typical Stream-Forming Ecosystem, Huangqian Reservoir, China

Terrimonas arctica sp. nov., isolated from Arctic tundra soil

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