“…Thus, the total CG potential is divided into two independent contributions: U total CG = U nonbonded CG + U bonded CG . The initial CG potentials are derived via the Boltzmann inverse of the target structural distribution of the bond length P CG ( l ), bending angle P CG (θ), the dihedral angle P CG (ϕ), and the nonbonded distance g ref ( r ) from AA simulation, which are as follows: where k B is the Boltzmann constant; l , θ, ϕ, and r represent the bond length, bending angle, dihedral angle, and nonbonded distance, respectively; and l 2 and sin θ are metric factors for bond and angle terms, respectively. , A new structural distribution is obtained based on the initial potential function of the CG model, which generally deviates from the target distribution. Therefore, it is necessary to optimize the potential function via repeated iterations by using the following equation: where P i ( q ) and U i CG ( q ) denote the probability distribution and potential of mean force, respectively, along the coordinate q at the i th iteration.…”