Cullin-based E3 ligases are a large family of multi-subunit ubiquitin ligases with diverse cellular functions, including the regulation of the cell cycle, of the DNA damage response, and of various transcription factors. These ligases are composed of one of six mammalian cullin homologs (Cul1, Cul2, Cul3, Cul4a, Cul4b, and Cul5), the Ring finger containing protein Roc1/ Rbx1, and cullin homolog-specific adaptor and substrate recognition subunits. To be active, cullin-based ligases require the covalent modification of a conserved lysine residue in the cullin protein with the ubiquitin-like protein Nedd8. We show in this study that in intact cells Cul1 neddylation is dependent on binding to adaptor proteins and substrate recognition subunits. Mutant Cul1 that is unable to recruit adaptor and substrate recognition subunits exhibits markedly reduced neddylation, and inhibiting binding of adaptor and substrate recognition subunits to wild type Cul1 reduces Nedd8 modification. This regulatory mechanism also extends to other cullin-based E3 ligases, including Cul2, Cul3, and Cul4a. The regulation of cullin neddylation by adaptor proteins and substrate recognition subunits in cells was found to be independent of both CAND1 and the COP9 signalosome, two negative regulators of cullin Nedd8 modification. Using hypoxia-inducible factor-1␣ (HIF-1␣), a substrate of the Elongin B/C-Cul2-VHL ligase, we demonstrate the critical role of substrate binding to promote Cul2 neddylation in a manner that does not require substrate ubiquitination but may involve a conformational change. These findings suggest a mechanism through which availability of substrate recognition subunits and substrates can regulate the ubiquitin ligase activity.
Cullin-based E33 ligases comprise a large family of ubiquitin ligases that mediate the ubiquitination of numerous cellular proteins with diverse functions including roles in cell signaling, transcriptional regulation, and cell cycle control (1). They are RING domain-containing ligases that function by binding the substrate through a protein-protein interaction domain and the E2 enzyme through the RING motif, thus bringing substrate and E2 enzyme into close proximity and facilitating the transfer of ubiquitin molecules to lysine residues in the substrate. Cullin-based E3 ligases are composed of several subunits, consisting of one of six mammalian cullin homologs (Cul1, Cul2, Cul3, Cul4a, Cul4b, and Cul5) that binds to the RING domain protein Roc1/Rbx1 via its C terminus. The cullin N terminus mediates binding of cullin homolog-specific substrate recognition subunits. Binding of the substrate recognition subunits requires specific adaptor proteins that bridge the interaction with the cullin homologs (except in the case of Cul3). For instance, Cul1 is known to bind substrate recognition subunits containing a conserved F-box via the adaptor protein Skp1, thus forming SCF (Skp1-Cul1-F-box) E3 ligases, whereas Cul2 and Cul5 recruit substrate recognition subunits with a VHL or SOCS box, respectively, via the ...