Background: High levels of reactive oxygen species are toxic to spermatozoa as they induce DNA damage, which leads to male infertility. Therefore, reduction of oxidative stress using reducing agents, such as antioxidant enzymes, is required. Peroxiredoxins (Prdxs) are known to play a critical role in the regulation of male fertility as antioxidant enzymes. Although several studies have suggested a close association between Prdxs and male fertility, few studies have explored the efficacy of Prdxs to predict fertility. Therefore, the current study was designed to discover the most sensitive biomarkers among the Prdxs with six isoforms, and furthermore to determine whether Prdxs are more suitable fertility markers for boar spermatozoa compared to conventional semen analysis.Results: The mRNA levels of PRDXs and several sperm parameters were examined in spermatozoa collected from 20 boars with different litter sizes. Our study showed that there was a significant positive correlation between the litter size and the levels of PRDX 4 among all isoforms in spermatozoa. Subsequently, a regression analysis using a combination of markers was conducted to increase efficacy for fertility prediction. According to the data, PRDX4 had the highest efficacy compared to other combination models. The prediction accuracy of male fertility was further evaluated through receiver operating characteristic curve analysis, which showed that PRDX 4 could predict the litter size with a high overall accuracy of 95%.Conclusions: As fertility biomarkers, genomic markers might be more accurate for predicting male fertility compared to conventional semen analysis. Our findings indicate that PRDX 4 might be a potential biomarker for diagnosing male fertility and subsequently improving reproductive efficacy in boars.